View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817_high_5 (Length: 360)
Name: NF4817_high_5
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 350
Target Start/End: Original strand, 30520088 - 30520436
Alignment:
| Q |
2 |
tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgctcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtca |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30520088 |
tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtatgtcttttgaacctagtca |
30520187 |
T |
|
| Q |
102 |
aagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaattggtg |
201 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30520188 |
aagtgaaagtgtaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtg |
30520287 |
T |
|
| Q |
202 |
aaagtaatctaaaattctattgaaaggtaagtacatattagccaattaacgatggttttagtcataatttgaattcaagctctctcaaacgatttttctt |
301 |
Q |
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|
||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30520288 |
aaagtaatctaaaattcgattgaaaagtaagtatatattagccaattaacgatggttttagtcataatttgaattcaagctctctcaaacgatttttctt |
30520387 |
T |
|
| Q |
302 |
taattgaagctcattaacccagtctcggacacgcatcaatgtgcaacac |
350 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30520388 |
taattgaagctcattaacccagtctcagacacgcatcaatgtgcaacac |
30520436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 48754915 - 48754701
Alignment:
| Q |
2 |
tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgctcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtca |
101 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48754915 |
tgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtca |
48754816 |
T |
|
| Q |
102 |
aagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaat-tggt |
200 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| ||| |
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| T |
48754815 |
aagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaaatgccgtaattttttttcttaaccttcaaattctcgttgaaaatggggt |
48754718 |
T |
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| Q |
201 |
gaaagtaatctaaaatt |
217 |
Q |
| |
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| |||||||||||||| |
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| T |
48754717 |
catagtaatctaaaatt |
48754701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 35633968 - 35634183
Alignment:
| Q |
2 |
tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgctcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35633968 |
tgagtgtgactggaaagataagccaacccaatcacaagcaccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtca |
35634067 |
T |
|
| Q |
102 |
aagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgta-attgtttttgttaaccttcaaattctcattgaaaat-tgg |
199 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||| || |
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| T |
35634068 |
aagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaaatgccgtagtttttttttcttaaccttcaaattctcgttgaaaatgggg |
35634165 |
T |
|
| Q |
200 |
tgaaagtaatctaaaatt |
217 |
Q |
| |
|
| | |||||||||||||| |
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|
| T |
35634166 |
tcatagtaatctaaaatt |
35634183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 45384986 - 45385200
Alignment:
| Q |
2 |
tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgctcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtca |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
45384986 |
tgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaatgttcatgttccacaaaaggcgaatattgtgtgtctattgaacctagtca |
45385085 |
T |
|
| Q |
102 |
aagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaat-tggt |
200 |
Q |
| |
|
||| ||||||||| ||||||||| |||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| |||||||| ||| |
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| T |
45385086 |
aagcgaaagtgcatgtcatttct--aagaagattgatagataccaattcaaataccgtaattttttttcttaaccttcaaattctcgttgaaaatggggt |
45385183 |
T |
|
| Q |
201 |
gaaagtaatctaaaatt |
217 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
45385184 |
catagtaatctaaaatt |
45385200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 42247498 - 42247688
Alignment:
| Q |
2 |
tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgctcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtca |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42247498 |
tgagtgtgaccggaaagataagccaacctaatcacaagcaccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtca |
42247597 |
T |
|
| Q |
102 |
aagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaat |
196 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| | || ||||| ||||||||||||||||| |||||||| |
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| T |
42247598 |
aagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaaatgcgtt--ttttttttcttaaccttcaaattctcgttgaaaat |
42247688 |
T |
|
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