View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817_high_8 (Length: 349)
Name: NF4817_high_8
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 27174 - 27511
Alignment:
| Q |
3 |
atgaaaataaagaaaatagatgaaaattgtcatttcattttttcctagatacttaacaatcataatgtcaactttcttggatgactaaattctgtttgca |
102 |
Q |
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| T |
27174 |
atgaaaataaagaaaatagatgaaaattatcatttcattttttcctagatacttaacaatcataatgtcaacttttttggatgactaaattctgtttgca |
27273 |
T |
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| Q |
103 |
ggtttctataggtttcctgctgatgattttagaggccttctccgccagacaaatcatggttgatatctcccattccatattggagggttgttcttcatgg |
202 |
Q |
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| T |
27274 |
ggtttctataggtttcctgctgatgattttagaggccttctccgccagacaaatcatggctgatatctcccattccatattggagggttgttcttcatgg |
27373 |
T |
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| Q |
203 |
ccaaggagttcatacagacccttagaagataatagcaatattcttggcttggcctacggctacttgtgtcaaacagcttagaacatttctaagtttgact |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27374 |
ccaaggagttcatacagacccttagaagataatagcaatattcttggcttggcctacgcctacttgtgtcaaacagcttagaacatttctaagtttgact |
27473 |
T |
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| Q |
303 |
tgttacaacttaaaataaacatgtgtccaaagtcattg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27474 |
tgttacaacttaaaataaacatgtgtccaaagtcattg |
27511 |
T |
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