View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817_high_9 (Length: 344)
Name: NF4817_high_9
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 10532166 - 10532468
Alignment:
| Q |
42 |
taattcatatttcaatttttggaacaaagctgaaagaaaaatggcacattcaagtttggatgaatccttcnnnnnnngtttggaagaagacaagaagaaa |
141 |
Q |
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| T |
10532166 |
taattcatatttcaatttttggaacaaagctgaaagaaaaatggcacattcaagtttggatgaatccttcaaaaaaagtttggaagaagacaagaagaaa |
10532265 |
T |
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| Q |
142 |
gaagtgattcgaatagaacgtgaatctgtcattccaattttgaaacctaagctcttcattgcattggctaatcttattagtatgtctctctatccttctt |
241 |
Q |
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| T |
10532266 |
gaagtgattcgaatagaacgtgaatctgtcattccaattttgaaacctaagctcttcattgcattggctaatcttattagtatgtctctctatccttctt |
10532365 |
T |
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| Q |
242 |
ttttcctctatcttagacctgtacgaacacattgatacgtcgatataagtaatgatttaagaaaattgacatatttcggtgttgtgtttgtgtctgatac |
341 |
Q |
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| T |
10532366 |
ttttcctctatcttagacctgtacgaaaacattgatacgtcgatataagtaatgatttaagaaaattgacatattttggtgttgtgtttgtgtttgatgc |
10532465 |
T |
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| Q |
342 |
atg |
344 |
Q |
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| T |
10532466 |
atg |
10532468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10532100 - 10532146
Alignment:
| Q |
1 |
atttcaatcaagtttcatagatcctttactacatttacatataattc |
47 |
Q |
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| T |
10532100 |
atttcattcaagtttcatagatcctttactacatttacatataattc |
10532146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 32470515 - 32470603
Alignment:
| Q |
136 |
aagaaagaagtgattcgaatagaacgtgaatctgtcattccaattttgaaacctaagctcttcattgcattggctaatcttattagtat |
224 |
Q |
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| T |
32470515 |
aagaatgaagttattcgtttagagcgtgaatctgttattccaattctcaaacctagactcatcatgacattggcaaatcttattggtat |
32470603 |
T |
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