View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4818-Insertion-10 (Length: 258)

Name: NF4818-Insertion-10
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4818-Insertion-10
NF4818-Insertion-10
[»] chr2 (3 HSPs)
chr2 (8-212)||(14810338-14810537)
chr2 (202-236)||(44073786-44073820)
chr2 (208-236)||(33732855-33732883)
[»] chr7 (1 HSPs)
chr7 (205-236)||(19465641-19465672)
[»] scaffold0051 (1 HSPs)
scaffold0051 (200-236)||(5687-5723)
[»] chr5 (1 HSPs)
chr5 (208-236)||(40029134-40029162)
[»] chr3 (1 HSPs)
chr3 (208-236)||(4513256-4513284)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 14810537 - 14810338
Alignment:
Q  8 gtttcttggtcttttctgcataagctacttaaggaagcaaacaatctcttgccgaaagatttttatctgtactgtgggtgtagcttattaacttattcat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||||    
T  14810537 gtttcttggtcttttctgcataagctacttaaggaagcaaacaatctcgtgccgaaagatttttatctgt-----gggtgtagcttattaacttattcat 14810443  T
Q  108 taatgtttttacggtatacatataatttaccgtacatattttaggaaatatacactataattgaaaagtgaaagaagtaagtcattagaaatgtataata 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  14810442 taatgtttttacggtatacatataatttaccgtacatattttaggaaatatacactataattgaaaagtgaaagaagtaagtctgtagaaatgtataata 14810343  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 44073820 - 44073786
Alignment:
Q  202 ataatatatttaaggctaaaatatggttttagtcc 236  Q
    |||||| ||||||||||||||||||||||||||||    
T  44073820 ataatacatttaaggctaaaatatggttttagtcc 44073786  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 33732855 - 33732883
Alignment:
Q  208 tatttaaggctaaaatatggttttagtcc 236  Q
    |||||||||||||||||||||||||||||    
T  33732855 tatttaaggctaaaatatggttttagtcc 33732883  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 19465641 - 19465672
Alignment:
Q  205 atatatttaaggctaaaatatggttttagtcc 236  Q
    ||||||||||||||||||||||||||||||||    
T  19465641 atatatttaaggctaaaatatggttttagtcc 19465672  T

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Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 5723 - 5687
Alignment:
Q  200 gtataatatatttaaggctaaaatatggttttagtcc 236  Q
    ||||||| || ||||||||||||||||||||||||||    
T  5723 gtataatttaattaaggctaaaatatggttttagtcc 5687  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 40029134 - 40029162
Alignment:
Q  208 tatttaaggctaaaatatggttttagtcc 236  Q
    |||||||||||||||||||||||||||||    
T  40029134 tatttaaggctaaaatatggttttagtcc 40029162  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 4513256 - 4513284
Alignment:
Q  208 tatttaaggctaaaatatggttttagtcc 236  Q
    |||||||||||||||||||||||||||||    
T  4513256 tatttaaggctaaaatatggttttagtcc 4513284  T

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