View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4818-Insertion-2 (Length: 706)

Name: NF4818-Insertion-2
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4818-Insertion-2
NF4818-Insertion-2
[»] chr6 (18 HSPs)
chr6 (137-513)||(5725853-5726229)
chr6 (7-142)||(5726353-5726488)
chr6 (228-457)||(4389398-4389630)
chr6 (165-513)||(4359695-4360052)
chr6 (158-513)||(4414868-4415225)
chr6 (532-700)||(18568981-18569150)
chr6 (303-457)||(4376791-4376945)
chr6 (303-448)||(4384364-4384509)
chr6 (60-142)||(4383978-4384060)
chr6 (60-142)||(4389091-4389173)
chr6 (61-142)||(4376405-4376486)
chr6 (55-134)||(4415368-4415447)
chr6 (56-134)||(4369243-4369321)
chr6 (612-697)||(2091048-2091133)
chr6 (41-134)||(4359451-4359544)
chr6 (380-513)||(4365312-4365445)
chr6 (380-448)||(4369706-4369774)
chr6 (16-134)||(4364803-4364921)
[»] chr7 (4 HSPs)
chr7 (531-706)||(28574729-28574904)
chr7 (532-706)||(32971702-32971876)
chr7 (532-675)||(5472114-5472258)
chr7 (555-653)||(38658047-38658145)
[»] chr2 (3 HSPs)
chr2 (531-706)||(16237540-16237715)
chr2 (532-703)||(32407703-32407874)
chr2 (601-662)||(11168963-11169024)
[»] chr3 (5 HSPs)
chr3 (531-706)||(48822952-48823127)
chr3 (532-706)||(20632922-20633096)
chr3 (532-706)||(11691880-11692054)
chr3 (578-706)||(10448894-10449022)
chr3 (531-559)||(10448877-10448905)
[»] chr1 (3 HSPs)
chr1 (531-706)||(29752210-29752384)
chr1 (531-706)||(38833022-38833194)
chr1 (532-706)||(18185605-18185773)
[»] chr4 (3 HSPs)
chr4 (531-706)||(24323376-24323551)
chr4 (532-706)||(36123688-36123864)
chr4 (560-655)||(40342706-40342801)
[»] chr5 (1 HSPs)
chr5 (531-706)||(39180871-39181046)
[»] chr8 (3 HSPs)
chr8 (61-142)||(3595690-3595771)
chr8 (538-697)||(5699645-5699804)
chr8 (585-686)||(14137902-14138002)


Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 137 - 513
Target Start/End: Complemental strand, 5726229 - 5725853
Alignment:
Q  137 tgtagaggcttaaaactaaagaaaacggaaaaaattgaattacttttttctgttcaaaccaagattacaaaacaaatgttctattttaaagctaaagttg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726229 tgtagaggcttaaaactaaagaaaacggaaaaaattgaattacttttttctgttcaaaccaagattacaaaacaaatgttctattttaaagctaaagttg 5726130  T
Q  237 atactcgatcctactgaacatgtatacctttctatgccacttttggaaagcctctgtatcaactccttagctttctccattgcctcgtaaatgaaaccca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726129 atactcgatcctactgaacatgtatacctttctatgccacttttggaaagcctctgtatcaactccttagctttctccattgcctcgtaaatgaaaccca 5726030  T
Q  337 tggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaa 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726029 tggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaa 5725930  T
Q  437 aaccaaatcctcgacgaattttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725929 aaccaaatcctcgacgaattttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 5725853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 5726488 - 5726353
Alignment:
Q  7 agtctcttcatcagctgtaactacaggtatgggctgaccaaaaacatttgcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726488 agtctcttcatcagctgtaactacaggtatgggctgaccaaaaacatttgcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcg 5726389  T
Q  107 ggatcagccaccatccttgttatacaatcatgtaga 142  Q
    ||||||||||||||||||||||||||||||||||||    
T  5726388 ggatcagccaccatccttgttatacaatcatgtaga 5726353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 228 - 457
Target Start/End: Original strand, 4389398 - 4389630
Alignment:
Q  228 ctaaagttgatactcgatcctactgaacatgtatacctttctatgccacttttggaaag---cctctgtatcaactccttagctttctccattgcctcgt 324  Q
    |||| ||||||| |||||||| ||||| || |||||||||||||||| | ||| |||||   |||  ||||    || ||||||||||||||||| || |    
T  4389398 ctaatgttgataatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttctccattgcttcat 4389497  T
Q  325 aaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaa 424  Q
    ||||||||||  |||||||||| ||||||||| ||||||||| |||||| | || ||||||||||||||||||  ||||||||||||||| |||||||||    
T  4389498 aaatgaaaccggtggctggttcatcaattgaattgaccaaacaaagcacatcaatcagaggatttgcacctttcaaacaaatcataacatttttccaaaa 4389597  T
Q  425 ctccttgtccaaaaccaaatcctcgacgaattt 457  Q
    ||||||||||||||||| |||||| || |||||    
T  4389598 ctccttgtccaaaaccacatcctcaacaaattt 4389630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 165 - 513
Target Start/End: Original strand, 4359695 - 4360052
Alignment:
Q  165 aaaaaattgaattacttttttctgttcaaaccaagattacaaaacaaatgttctattttaaagctaaagttgatactcgatcctactgaacatgtatacc 264  Q
    |||||||||||||||||||   |||| ||||||||| | | |||||||||||| |||||||| |||||||| |||||||||||| | |||||| | ||||    
T  4359695 aaaaaattgaattacttttcgttgtttaaaccaagactgcgaaacaaatgttcaattttaaaactaaagttaatactcgatcctgccgaacatatttacc 4359794  T
Q  265 tttc------tatgccacttttggaaagcctct---gtatcaactccttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattga 355  Q
    ||||      | || ||  || |||||| ||||   |||||  |||  |||||||| |||||||||| |||||||||||||| | |||||  || |||||    
T  4359795 tttccctttctttgtcatcttcggaaagactcttctgtatctcctctatagctttcaccattgcctcataaatgaaacccatagttggtttctcgattga 4359894  T
Q  356 actgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaat 455  Q
    | || ||||||||| ||||| ||  | ||||| |  ||||||||||||||||||||||| |||||||||| | |||| |||||||  |||||| | | ||    
T  4359895 attggccaaacgaaacacttcaagtataggatatatacctttataacaaatcataacatttttccaaaaccctttgttcaaaaccgcatcctcaatgtat 4359994  T
Q  456 tttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 513  Q
    || |||||  | |||| |||||||||| |||||||||||  ||||||| |||||||||    
T  4359995 ttcccattcatcgtctttgcaaactcgctggacttccactccttggatttgaacattc 4360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 158 - 513
Target Start/End: Complemental strand, 4415225 - 4414868
Alignment:
Q  158 aaaacggaaaaaattgaattacttttttctgttcaaaccaagattacaaaacaaatgttctattttaaagctaaagttgatactcgatcctactgaacat 257  Q
    ||||| ||||||| ||||||||||||  | || ||||||||||  |||||||||| | || ||  |||||||||||| || | |||||||| |   ||||    
T  4415225 aaaactgaaaaaagtgaattacttttcacggt-caaaccaagaaaacaaaacaaaagctcaatagtaaagctaaagtcgacaatcgatcctgcaagacat 4415127  T
Q  258 gtatacctttctatgccacttttggaaagcctct---gtatcaactccttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattg 354  Q
     | |||||||||||| ||| ||||||||| |||    |||||  ||| ||||||| ||||| |||||| |||||| ||||  ||||||| || || ||||    
T  4415126 atttacctttctatgacacctttggaaagactccttcgtatctcctctttagcttgctccaatgcctcataaatggaaccggtggctggctcatctattg 4415027  T
Q  355 aactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaa 454  Q
    |||||||||||| |||||||| |||||| |||| ||||| |||| |||||||||| || | || ||||||| |  |||||||||||| |||||||||| |    
T  4415026 aactgaccaaacaaagcacttcaaccaggggatgtgcacttttaaaacaaatcatgacgttttcccaaaaccctgtgtccaaaaccacatcctcgacgta 4414927  T
Q  455 ttttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 513  Q
    ||| |||||  | ||||  || |||| | |||||||||||  |||||||||||||||||    
T  4414926 tttcccattactcgtcttcgccaactggctggacttccactccttggatgtgaacattc 4414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 532 - 700
Target Start/End: Complemental strand, 18569150 - 18568981
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    |||||||||||||  ||| ||||||||||||||||| ||| |||||||||| ||||||||||||   ||||||| | || ||||||||||| |||||| |    
T  18569150 atgaaagggagggatgaaacccggaaaaagaaattagatcataatcaagcgtggaaaagtaacctttgcttgataaacatctaacaaatggctaatttaa 18569051  T
Q  632 gtcggacacgactcataaaacatcatctca-ttctccatgatacatccaatattagctaacgcatcagcg 700  Q
    ||| |||||||||||||| |||| |||||| ||| |||||| |||||||||||||||||| |||||||||    
T  18569050 gtcagacacgactcataatacataatctcatttccccatgaaacatccaatattagctaatgcatcagcg 18568981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 303 - 457
Target Start/End: Original strand, 4376791 - 4376945
Alignment:
Q  303 ttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataac 402  Q
    ||||||||||||||||| || |||||||||||  |||||||||| || |||| | |||||||||||||||| | || |||||||||||| || ||  |||    
T  4376791 ttagctttctccattgcttcataaatgaaaccagtggctggttcatcgattgtattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaac 4376890  T
Q  403 aaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattt 457  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| || |||||    
T  4376891 aaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaattt 4376945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 303 - 448
Target Start/End: Original strand, 4384364 - 4384509
Alignment:
Q  303 ttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataac 402  Q
    ||||||||||||||||| || |||||||||||  |||||||||| || |||||| |||||||||||||||| | || |||||||||||| || ||  |||    
T  4384364 ttagctttctccattgcttcataaatgaaaccggtggctggttcatcgattgaattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaac 4384463  T
Q  403 aaatcataacatctttccaaaactccttgtccaaaaccaaatcctc 448  Q
    || || |||||| |||||| ||||||||||||||||||| ||||||    
T  4384464 aattcgtaacatttttccagaactccttgtccaaaaccacatcctc 4384509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 4383978 - 4384060
Alignment:
Q  60 gtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaatcatgtaga 142  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4383978 gtttatcgaaatcatcgagttgaatttcaattttagctctttcttcgggatcagccaccatcctttttatacaatcgtgtaga 4384060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 4389091 - 4389173
Alignment:
Q  60 gtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaatcatgtaga 142  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  4389091 gtttatcgaaagcatcaagttgaatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtaga 4389173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 4376405 - 4376486
Alignment:
Q  61 tttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaatcatgtaga 142  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||    
T  4376405 tttatcgaaatcatcaagttgaatttcaatcttagctctctcttcggaatcggccaccatccttgtgatacaatcatgtaga 4376486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 4415447 - 4415368
Alignment:
Q  55 tgcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaat 134  Q
    |||| ||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4415447 tgcccgtttatcgaaatcatcaagtcgaatctcaatcttagctctttcttcgggatcggccaccatccttgttatacaat 4415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 4369243 - 4369321
Alignment:
Q  56 gcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaat 134  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||    
T  4369243 gcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaat 4369321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 612 - 697
Target Start/End: Original strand, 2091048 - 2091133
Alignment:
Q  612 ctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatca 697  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||  |||| |||||||||||||| ||||||    
T  2091048 ctaacaaatgattaatttgagtcggacaagactcataaaacatcatctcataccccattctacacccaatattagctaaagcatca 2091133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 4359451 - 4359544
Alignment:
Q  41 tgaccaaaaacatttgcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaat 134  Q
    |||||||||  ||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||  || |||||||||||||||||||    
T  4359451 tgaccaaaatgattagcctgtttatcgaaatcttcaagttgaatttcaatcctagatctttcttcaggattggctaccatccttgttatacaat 4359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 380 - 513
Target Start/End: Original strand, 4365312 - 4365445
Alignment:
Q  380 cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattttccattttttgtctctgcaaac 479  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||  |  |||| | |    ||| ||||||||||    
T  4365312 cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctctgcccatttcctagaccttggctctgcaaac 4365411  T
Q  480 tcgttggacttccacctcttggatgtgaacattc 513  Q
    ||| ||||||||||   || ||||||||||||||    
T  4365412 tcgctggacttccattcctcggatgtgaacattc 4365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 448
Target Start/End: Original strand, 4369706 - 4369774
Alignment:
Q  380 cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctc 448  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  4369706 cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc 4369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 4364803 - 4364921
Alignment:
Q  16 atcagctgtaactacaggtatgggctgaccaaaaacatttgcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagcc 115  Q
    ||||||||||| ||| | ||| || ||||| ||   ||| |||||| |||||||||| |||||||||||||||||||| | |||||||| | |||  | |    
T  4364803 atcagctgtaattacggctattggatgaccgaattgattagcctgtctatcgaaatcatcaagttgaatttcaatcttcgatctttctttgtgattggtc 4364902  T
Q  116 accatccttgttatacaat 134  Q
    |||||||||||||||||||    
T  4364903 accatccttgttatacaat 4364921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 531 - 706
Target Start/End: Original strand, 28574729 - 28574904
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574729 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 28574828  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574829 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 28574904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 532 - 706
Target Start/End: Complemental strand, 32971876 - 32971702
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32971876 atgaatgggaggaccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga 32971777  T
Q  632 gtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  32971776 gtcggacacgactcataaaacatcatctcatttcccatgatacatccaatattagctaacgtatcagcgcaccta 32971702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 532 - 675
Target Start/End: Complemental strand, 5472258 - 5472114
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaaccc-ccgcttgatcagcagctaacaaatggttaatttg 630  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||  | ||||||||||| || |||||||||||||||||||    
T  5472258 atgaaagggagggccgaaatccgaaaaaagaaattacatcttaatcaagcgcggaaaagtaaatctccgcttgatcaacaactaacaaatggttaatttg 5472159  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgataca 675  Q
    ||| || |||||||||||| |||||||||||||| ||||||||||    
T  5472158 agttgggcacgactcataatacatcatctcattccccatgataca 5472114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 653
Target Start/End: Original strand, 38658047 - 38658145
Alignment:
Q  555 gaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaaca 653  Q
    |||| |||||||||||||||||||| |||||||||| || ||  | ||||||||||  |||||||||  ||||||||||||||||  |||| |||||||    
T  38658047 gaaagagaaattacatcttaatcaaacgcggaaaagaaatccatgtttgatcagcaattaacaaatgactaatttgagtcggacaaaactcgtaaaaca 38658145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 531 - 706
Target Start/End: Complemental strand, 16237715 - 16237540
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16237715 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 16237616  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16237615 agtcggacacgactcataaaacatcatcccattctccatgatacatccaatattagctaacgcatcagcgcaccta 16237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 532 - 703
Target Start/End: Complemental strand, 32407874 - 32407703
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32407874 atgaaagggagggcctaagcccggaaaaagaaattacatcttaatcaaacgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 32407775  T
Q  632 gtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcac 703  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32407774 gtcggacacaacttataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcac 32407703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 662
Target Start/End: Complemental strand, 11169024 - 11168963
Alignment:
Q  601 ttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcat 662  Q
    |||||||||||| ||||||||  ||||||| |||||||| || |||||||||||||||||||    
T  11169024 ttgatcagcagcaaacaaatgactaatttgtgtcggacaagattcataaaacatcatctcat 11168963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 531 - 706
Target Start/End: Original strand, 48822952 - 48823127
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48822952 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagtgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 48823051  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48823052 agtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcaccta 48823127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 532 - 706
Target Start/End: Original strand, 20632922 - 20633096
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20632922 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 20633021  T
Q  632 gtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20633022 gtcggtcacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcaccta 20633096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 532 - 706
Target Start/End: Original strand, 11691880 - 11692054
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11691880 atgaaagggagagccgaagcccggaaaaagaaattacgtcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 11691979  T
Q  632 gtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11691980 gtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcaccta 11692054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 578 - 706
Target Start/End: Original strand, 10448894 - 10449022
Alignment:
Q  578 aagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattctccatgatacatc 677  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  10448894 aagcccggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcagacacgactcataaaacatcatctcattccccatgatacatc 10448993  T
Q  678 caatattagctaacgcatcagcgcaccta 706  Q
    |||||||||||||||||||||||||||||    
T  10448994 caatattagctaacgcatcagcgcaccta 10449022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 559
Target Start/End: Original strand, 10448877 - 10448905
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaa 559  Q
    |||||||||||||||||||||||||||||    
T  10448877 gatgaaagggagggccgaagcccggaaaa 10448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 7e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 531 - 706
Target Start/End: Original strand, 29752210 - 29752384
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29752210 gatgaaagggagggccgaagcccggaaaaagaaattatatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 29752309  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  29752310 agtcggacacgactcataaaacatcatctcattccccatgataca-ccaatattagctaacgcatcagcgcaccta 29752384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 531 - 706
Target Start/End: Original strand, 38833022 - 38833194
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    ||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38833022 gatgaaagggagggccgaagctcggaa---gaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 38833118  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38833119 agtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcgcaccta 38833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 532 - 706
Target Start/End: Complemental strand, 18185773 - 18185605
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||  |||||| |||||||||||||||||||||||    
T  18185773 atgaaagggagggccgaagcccggaaaaagaaattacatcttaataaagcacggaaaaataacccccgtctgatcaacagctaacaaatggttaatttga 18185674  T
Q  632 gtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||      |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18185673 gt------cgactcataaaatatcatctcattccccatgatacatccaatattagctaacgcatcagcgcaccta 18185605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 531 - 706
Target Start/End: Original strand, 24323376 - 24323551
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24323376 gatgaaagggagggccgaagcccgaaaaaagaaattatatcttaatcaagcgccgaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 24323475  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  24323476 agtcggacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcagcacaccta 24323551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 532 - 706
Target Start/End: Original strand, 36123688 - 36123864
Alignment:
Q  532 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 631  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  36123688 atgaaagggagggccgaaacccggaaaaagaaattaaatcttaatcaaatgcggaaaagtaaccctcgcttgatcagcagctaacacatggttaatttga 36123787  T
Q  632 gtcggacacgactcataaaacatcatctcattctcc--atgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||    
T  36123788 gtcggacacgactcataaaacatcatctcattccccatatgatacatccaatattagctagcgcatcagcgcaccta 36123864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 655
Target Start/End: Complemental strand, 40342801 - 40342706
Alignment:
Q  560 agaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatc 655  Q
    |||||||||||||||||||| |||  ||||| || |||  ||| |||||||| |||||||||  |||||||||||||| | || ||||||||||||    
T  40342801 agaaattacatcttaatcaaacgcaaaaaagaaatcccttcttaatcagcagttaacaaatgactaatttgagtcggataagagtcataaaacatc 40342706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 531 - 706
Target Start/End: Complemental strand, 39181046 - 39180871
Alignment:
Q  531 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 630  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  39181046 gatgaaaggaagggccgaagcccggaaaaagaaattacatcttaatcaagtgcggaaaagtaactctcgcttgatcagcagctaacaaatggttaatttg 39180947  T
Q  631 agtcggacacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatcagcgcaccta 706  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  39180946 agtcggacatgactcataaaacatcatctcattcctcatgatacatctaatattagctaacgcatcagcgcaccta 39180871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 3595771 - 3595690
Alignment:
Q  61 tttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaatcatgtaga 142  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  3595771 tttatcgaaatcatcaagttgaatttcaatcttagctctttcttcaggatcggccaccatccttgttatacaatcatgtaga 3595690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 697
Target Start/End: Complemental strand, 5699804 - 5699645
Alignment:
Q  538 gggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcgga 637  Q
    |||||||||||||| |  ||| |||||||||||||||||||| | |  ||||| |||||| |||||||||||||||||||||||  ||||||||||||||    
T  5699804 gggagggccgaagctcaaaaagagaaattacatcttaatcaaacacataaaagaaacccctgcttgatcagcagctaacaaatgactaatttgagtcgga 5699705  T
Q  638 cacgactcataaaacatcatctcattctccatgatacatccaatattagctaacgcatca 697  Q
    || ||||||||||| | ||| ||||   ||||  |||| || ||||||||||| ||||||    
T  5699704 caagactcataaaataccatttcatgacccattctacaccccatattagctaaagcatca 5699645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 585 - 686
Target Start/End: Complemental strand, 14138002 - 14137902
Alignment:
Q  585 gaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattctccatgatacatccaatatt 684  Q
    |||||||||||||||||| |||| || ||||||||||  | |||| ||||| ||| |||||||||||| |||||||||||| ||||||| | ||||||||    
T  14138002 gaaaagtaacccccgcttaatcatcaactaacaaatgacttatttaagtcgaacatgactcataaaacgtcatctcattcttcatgata-acccaatatt 14137904  T
Q  685 ag 686  Q
    ||    
T  14137903 ag 14137902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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