View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4818-Insertion-3 (Length: 582)

Name: NF4818-Insertion-3
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4818-Insertion-3
NF4818-Insertion-3
[»] scaffold0421 (2 HSPs)
scaffold0421 (351-582)||(13420-13651)
scaffold0421 (219-285)||(13270-13336)
[»] chr3 (7 HSPs)
chr3 (8-143)||(21625673-21625811)
chr3 (137-216)||(21625392-21625471)
chr3 (355-405)||(47345357-47345407)
chr3 (452-505)||(47345319-47345372)
chr3 (226-285)||(47345492-47345551)
chr3 (454-503)||(3798187-3798236)
chr3 (421-462)||(34164988-34165028)
[»] scaffold0004 (1 HSPs)
scaffold0004 (45-143)||(336473-336571)
[»] scaffold1543 (1 HSPs)
scaffold1543 (137-216)||(1558-1637)
[»] chr8 (2 HSPs)
chr8 (421-462)||(39033975-39034016)
chr8 (363-429)||(39033977-39034043)


Alignment Details
Target: scaffold0421 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 351 - 582
Target Start/End: Original strand, 13420 - 13651
Alignment:
Q  351 tgagaaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctcctcctagtctccgatctccga 450  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||    
T  13420 tgagaaacgcggtctctgctctctccatctctctgtctttgccatctcctcccaatctccggtctttgaccgccatctcctcatagtctccgatctccga 13519  T
Q  451 ccgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctccttctgcaattcaacattgactattgtctccgtcgccgaatcaaac 550  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||    
T  13520 ccgccatctcttcccagtctccgacggctgcattctctctaacggtctcttctccttctgcgattcaacatcgactgctgtctccgtcgccgaatcaaac 13619  T
Q  551 cgttgaaggtgatgtatatcttaaatcttgta 582  Q
    ||||||||||||||||||| ||||||||||||    
T  13620 cgttgaaggtgatgtatattttaaatcttgta 13651  T

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Target: scaffold0421; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 13270 - 13336
Alignment:
Q  219 aaaaagattcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13270 aaaaagattcatgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatat 13336  T

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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 21625811 - 21625673
Alignment:
Q  8 atattaagtgattttcatgaatgataatttctggaaattgttg---aaattagaattagggtggattagtgtgtggaactagaattatagttatacaaat 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21625811 atattaagtgattttcatgaatgataatttcttgaaattgttgttgaaattagaattagggtggattagtgtgtggaactagaattatagttatacaaat 21625712  T
Q  105 tctttaactaagctatgtctaggaacattaagtaattaa 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  21625711 tctttaactaagctatgtttaggaacattaagtaattaa 21625673  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 21625471 - 21625392
Alignment:
Q  137 taattaagtcatagacttcttgtgatacttaagaactaggccagtttatagacagagcaaaagaaaagtattttctttac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  21625471 taattaagtcatagacttcttgtgatacttaagaactaggccaatttatagacagagaaaaagaaaagtattttctttac 21625392  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 47345407 - 47345357
Alignment:
Q  355 aaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaa 405  Q
    ||||||| ||||||||||||||||||||  ||| |||||||||||||||||    
T  47345407 aaacgcgatctctgctctctccatctctctgtcatcgccatctcctcccaa 47345357  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 47345372 - 47345319
Alignment:
Q  452 cgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctcc 505  Q
    ||||||||| ||||| |||||||| ||||||||||||| |||| ||||||||||    
T  47345372 cgccatctcctcccaatctccgaccgccgcattctctctaacgatctcttctcc 47345319  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 47345551 - 47345492
Alignment:
Q  226 ttcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatat 285  Q
    ||||||||  ||||||||||||||||||||| || |||  |||||||| |||||||||||    
T  47345551 ttcatgtattactcttttggtacacccttttatagcactgatgacatgacatggaaatat 47345492  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 503
Target Start/End: Original strand, 3798187 - 3798236
Alignment:
Q  454 ccatctcttcccagtctccgacggccgcattctctcaaacggtctcttct 503  Q
    ||||||| || ||||||||||| ||||||||||||| |||| ||||||||    
T  3798187 ccatctcctctcagtctccgaccgccgcattctctctaacgatctcttct 3798236  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 34165028 - 34164988
Alignment:
Q  421 cgccatctcctcctagtctccgatctccgaccgccatctctt 462  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  34165028 cgccatctcctcc-agtctccgatctccgaccgtcatctctt 34164988  T

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Target: scaffold0004 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 336473 - 336571
Alignment:
Q  45 ttgttgaaattagaattagggtggattagtgtgtggaactagaattatagttatacaaattctttaactaagctatgtctaggaacattaagtaattaa 143  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  336473 ttgttgaaattagaattaggatggattagtgtgtggaactagaattatagttatacaaattctttaactaagttatgcctaggaatattaagtaattaa 336571  T

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Target: scaffold1543 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold1543
Description:

Target: scaffold1543; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 1637 - 1558
Alignment:
Q  137 taattaagtcatagacttcttgtgatacttaagaactaggccagtttatagacagagcaaaagaaaagtattttctttac 216  Q
    |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  1637 taattaagtcatagacttattgtgatacttaagaaataggtcagtttatagacagagaaaaagaaaagtattttctttac 1558  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 39034016 - 39033975
Alignment:
Q  421 cgccatctcctcctagtctccgatctccgaccgccatctctt 462  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  39034016 cgccatctcctcccagtctccgatctccgaccgccatctctt 39033975  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 39034043 - 39033977
Alignment:
Q  363 tctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctc 429  Q
    ||||| ||||||||||||||  ||| ||||||||||||||||  || ||||||  ||||||||||||    
T  39034043 tctcttctctctccatctctctgtcgtcgccatctcctcccagtctccgatctccgaccgccatctc 39033977  T

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