View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818-Insertion-4 (Length: 381)
Name: NF4818-Insertion-4
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 35829750 - 35830123
Alignment:
| Q |
8 |
ctttgatggacatttgagcttaaaggacaatgaagatgctgcaaaggactttggcaacatacaccgttttcctcctctagcagtgttgcatccaaaaact |
107 |
Q |
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| T |
35829750 |
ctttgatggccatttgagcttaaaggacaatgaagatgctgcaaaggactttggcaacatacaccattttcctcctctagcagtgttacatccaaaaact |
35829849 |
T |
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| Q |
108 |
gtttcagatatttcacgtaccgtaaaacatatttttgaaaaaggatctgattcagagttgaaggtagctgctagaggccatggacattcccttcaaggtc |
207 |
Q |
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| T |
35829850 |
gtttcagatatttcacgtaccgtaaaacatatttttgaaaaagggtctgattcagagttgaaggtagctgctagaggccatggacattcccttcaaggtc |
35829949 |
T |
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| Q |
208 |
aagcacaagcacatcaaggactagtcatcaaaatggagtcacttcagagtcctgaaatgaaaattcagaccggtgaatttccttttgtcgatgtctcagg |
307 |
Q |
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| T |
35829950 |
aagcacaagcacatcaaggactagtcatcaaaatggagtcacttcagagtcctgaaatgaaaattcagaccggtgaatttccttttgtcgatgtctcagg |
35830049 |
T |
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| Q |
308 |
tggtgagttgtggataaacattctgcatgagactctaaaacatggattgtcaccaaaatcttggacagactatc |
381 |
Q |
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| T |
35830050 |
tggtgagttgtggataaacattctgcatgagactctaaaacatggattggcaccaaaatcttggacagactatc |
35830123 |
T |
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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 54354 - 54433
Alignment:
| Q |
297 |
gatgtctcaggtggtgagttgtggataaacattctgcatgagactctaaaacatggattgtcaccaaaatcttggacaga |
376 |
Q |
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| T |
54354 |
gatgtctctggtggtgaattgtggataaacatcttgcatgagactttgaaatatgggttggcaccaagatcatggacaga |
54433 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 14785376 - 14785297
Alignment:
| Q |
297 |
gatgtctcaggtggtgagttgtggataaacattctgcatgagactctaaaacatggattgtcaccaaaatcttggacaga |
376 |
Q |
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| T |
14785376 |
gatgtctctggtggtgaattgtggataaacatcttgcatgagactttgaaatatgggttggcaccaagatcatggacaga |
14785297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 13415528 - 13415434
Alignment:
| Q |
282 |
gaatttccttttgtcgatgtctcaggtggtgagttgtggataaacattctgcatgagactctaaaacatggattgtcaccaaaatcttggacaga |
376 |
Q |
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| T |
13415528 |
gaatttccttatgtggatgtgtcaggaggtgaattatggataaagattttgcatgagacattgaagtatggtttggcaccaagatcttggacaga |
13415434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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