View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818-Insertion-5 (Length: 370)
Name: NF4818-Insertion-5
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818-Insertion-5 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 36223306 - 36222944
Alignment:
| Q |
8 |
tctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgcaagctgaataattgttttgttcaatgtgcagacactagaagtgcttga |
107 |
Q |
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| T |
36223306 |
tctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgcaagctgaataattgttttgttcaatgtgcagacactagaagtgcttga |
36223207 |
T |
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| Q |
108 |
gttgtctaaataaatcaaagataagttgaaaggaactgataaatatggtataattcttacttttgttgtattttaattcaagttagtt-gnnnnnnngag |
206 |
Q |
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| T |
36223206 |
gttgtctaaataaatcaaagataagttgaaaggaactgataaatatggtataattcttacttttgttgtattttaattcaagttagttggaaaaaaagag |
36223107 |
T |
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| Q |
207 |
tagttaaaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtatat |
306 |
Q |
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| T |
36223106 |
tagttaaaaacagttagtttttggttagctattttgatggagttagttag-tttgattgattacttgtattgcaagtaagccatataagtagttgtatat |
36223008 |
T |
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| Q |
307 |
aagcttgtaatctcagattttcattactaatgagaacatagtttacaatcacattgatttctct |
370 |
Q |
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| T |
36223007 |
aagcttgtaatctcagattttcattactaatgagaacatagtttacaatcacattgatttctct |
36222944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 205 - 370
Target Start/End: Complemental strand, 36227157 - 36226989
Alignment:
| Q |
205 |
agtagttaaaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtat |
304 |
Q |
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| T |
36227157 |
agtagttaaaaacagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaagccacataagttgtt-tat |
36227059 |
T |
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| Q |
305 |
ataagcttgtaatctcagattttcattac----taatgagaacatagtttacaatcacattgatttctct |
370 |
Q |
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| T |
36227058 |
ataagcttgtaatcttagattttcattactaaataatgagaacatagtttacaatcacattgatctctct |
36226989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 36227255 - 36227185
Alignment:
| Q |
8 |
tctttaatacttattagattgttgttgt--gggaattgatgtttgttctcttgcaagctgaataattgttt |
76 |
Q |
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| T |
36227255 |
tctttagtacttattagattgttgttgtatgggagttgatgtttgttctcttgcaagctgaacaattgttt |
36227185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 13575506 - 13575558
Alignment:
| Q |
311 |
ttgtaatctcagattttcatt-actaatgagaacatagtttacaatcacattg |
362 |
Q |
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| T |
13575506 |
ttgtaatctctaattttcattcactaatgagaacacactttacaatcacattg |
13575558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 213 - 355
Target Start/End: Original strand, 28067302 - 28067445
Alignment:
| Q |
213 |
aaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtatataagctt |
312 |
Q |
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| T |
28067302 |
aaaacagttattagtttgttagctattttgatggagttagttagttttgaataattacttgtattggaagtaagtcatataaataattgtataaaaacct |
28067401 |
T |
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| Q |
313 |
gtaatctcagattttca-ttactaatgagaacatagtttacaat |
355 |
Q |
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| T |
28067402 |
gtaatctcatatcttcatttactaatgaaaacatagtttacaat |
28067445 |
T |
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