View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818-Insertion-7 (Length: 340)
Name: NF4818-Insertion-7
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818-Insertion-7 |
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| [»] chr6 (12 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 34727460 - 34727792
Alignment:
| Q |
8 |
ttaatggtttacggtgttattattggacaagttttgagatagtatagaggatttaatgtactttttcctagcttgtagttgtagcatttcttgtcgtgga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34727460 |
ttaatggtttacggtgttattattggacaagttttgagatagtatagaggatttaatgtactttttcctagcttgtagttgtagcatttcttgtcgtgga |
34727559 |
T |
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| Q |
108 |
ttgtggcacattgaggagaagcatatcaaccgattttataatagaattttgatatgannnnnnnnnaccattatatttttctcgaaaatgaaattaatag |
207 |
Q |
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| T |
34727560 |
ttgtggcacattgaggagaagcatatcaaccgattttataatagaattttgatatgatttttttttaccattatatttttctcgaaaatgaaattaatag |
34727659 |
T |
|
| Q |
208 |
tgattcctttccctttgccttacaatacaacaagcattttacgagaatctgatattaaattttgagaactaatgacaatctgattaaatttggaaaacta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34727660 |
tgattcctttccctttgccttacaatacaacaagcattttacgagaatctgatattaaattttgagaactaatgagaatctgattaaatttggaaaacta |
34727759 |
T |
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| Q |
308 |
atgagaatctgatattaaattttgaaaactaat |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34727760 |
atgagaatctgatattaaattttgaaaactaat |
34727792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 135 - 340
Target Start/End: Original strand, 34606351 - 34606557
Alignment:
| Q |
135 |
aaccgattttataatagaattttgatatgannnnnnnnn-accattatatttttctcgaaaatgaaattaatagtgattcctttccctttgccttacaat |
233 |
Q |
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| T |
34606351 |
aaccgattttataatagaattttgatatgattttttttttaccattatatttttctcgaaaatgaaattaatagtgattcctttccctttgccttacaat |
34606450 |
T |
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| Q |
234 |
acaacaagcattttacgagaatctgatattaaattttgagaactaatgacaatctgattaaatttggaaaactaatgagaatctgatattaaattttgaa |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34606451 |
acaacaagcattttacgagaatctgatattaaattttgagaactaatgagaatctgattaaatttggaaaactaatgagaatctgatattaaattttgaa |
34606550 |
T |
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| Q |
334 |
aactaat |
340 |
Q |
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||||||| |
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| T |
34606551 |
aactaat |
34606557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 135 - 322
Target Start/End: Original strand, 34612524 - 34612712
Alignment:
| Q |
135 |
aaccgattttataatagaattttgatatgannnnnnnnnaccattatatttttctcgaaaatgaaattaatagtgattcctttccctttgccttacaata |
234 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34612524 |
aaccgattttataatagaattttgatatgatttttttttaacattatatttttctcgaaaatgaaattaatagtgattcctttccctttgccttacaata |
34612623 |
T |
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| Q |
235 |
caacaagcattttacgagaatctgatattaaattttgagaac-taatgacaatctgattaaatttggaaaactaatgagaatctgatat |
322 |
Q |
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| T |
34612624 |
caacaagcattttacgagaatctgatattaaattttaagaacttaatgagaatctgattaaatttggaaaactgatgagaatctgatat |
34612712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 34606183 - 34606310
Alignment:
| Q |
8 |
ttaatggtttacggtgttattattggacaagttttgagatagtatagaggatttaatgtactttttcctagcttgtagttgtagcatttcttgtcgtgga |
107 |
Q |
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| T |
34606183 |
ttaatggtttacggtgttattattggacaagttttgagatagtatagaggatttaatgtactttttcctaacttgtagttgtagcatttcttgtcgtgga |
34606282 |
T |
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| Q |
108 |
ttgtggcacattgaggagaagcatatca |
135 |
Q |
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| T |
34606283 |
ttgtggcacattgaggagaagcatatca |
34606310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 34609279 - 34609404
Alignment:
| Q |
10 |
aatggtttacggtgttattattggacaagttttgagatagtatagaggatttaatgtactttttcctagcttgtagttgtagcatttcttgtcgtggatt |
109 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||| ||||| ||||||| |
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| T |
34609279 |
aatggtttacagttttattattggacaagttttgagatagtatagaggattcaatgtaccttttcctaacctgtagttgtagcattgcttgttgtggatt |
34609378 |
T |
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| Q |
110 |
gtggcacattgaggagaagcatatca |
135 |
Q |
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| T |
34609379 |
gtggcacattggggagaagcgtatca |
34609404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 33465348 - 33465272
Alignment:
| Q |
176 |
cattatatttttctcgaaaatgaaattaatagtgattcctttccctttgccttacaatacaacaagcattttacgag |
252 |
Q |
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| T |
33465348 |
cattatatttttctcgaaaatgaaattaatagtgattcctttccccttgccttacaatacaacaagcattttacgag |
33465272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 34609490 - 34609566
Alignment:
| Q |
176 |
cattatatttttctcgaaaatgaaattaatagtgattcctttccctttgccttacaatacaacaagcattttacgag |
252 |
Q |
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| T |
34609490 |
cattatatttttctcgaaaatgaaattaacagtgattcctttccccatgccttgcaatacaacaagcattttacgag |
34609566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 33465563 - 33465445
Alignment:
| Q |
10 |
aatggtttacggtgttattattggacaagttttgagatagtatagaggatttaatgtactttttcctagcttgtagttgtagcatttcttgtcgtggatt |
109 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||| | |||||| ||||||| ||||| || | || |||||||||| ||||| ||||||| |
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| T |
33465563 |
aatggtttacagttttattattggacaagttttgagattg-----aggattcaatgtaccttttcttaa--tataattgtagcattgcttgttgtggatt |
33465471 |
T |
|
| Q |
110 |
gtggcacattgaggagaagcatatca |
135 |
Q |
| |
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||||||||| || ||||||||||||| |
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| T |
33465470 |
gtggcacatagaagagaagcatatca |
33465445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 34612732 - 34612764
Alignment:
| Q |
308 |
atgagaatctgatattaaattttgaaaactaat |
340 |
Q |
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| T |
34612732 |
atgagaatctgatattaaattttgaaaactaat |
34612764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 34609445 - 34609474
Alignment:
| Q |
135 |
aaccgattttataatagaattttgatatga |
164 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
34609445 |
aaccgattttataatagaattttgatatga |
34609474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 34606527 - 34606559
Alignment:
| Q |
250 |
gagaatctgatattaaattttgagaactaatga |
282 |
Q |
| |
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| T |
34606527 |
gagaatctgatattaaattttgaaaactaatga |
34606559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 34612734 - 34612766
Alignment:
| Q |
250 |
gagaatctgatattaaattttgagaactaatga |
282 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
34612734 |
gagaatctgatattaaattttgaaaactaatga |
34612766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 38866282 - 38866254
Alignment:
| Q |
28 |
tattggacaagttttgagatagtatagag |
56 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38866282 |
tattggacaagttttgagatagtatagag |
38866254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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