View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818-Insertion-8 (Length: 320)
Name: NF4818-Insertion-8
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 41729170 - 41729482
Alignment:
| Q |
8 |
acaactgaaccagcgccaattttagcaccatcaccaatcttaatattccccaaaatacaagttccagcgcctataagcaccccgtcaccaatctttggat |
107 |
Q |
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| T |
41729170 |
acaactgaaccggcaccaattttagcaccatcaccaatcttaatattccccaaaatacaagttccagcgcctataagcaccccgtcaccaatctttggat |
41729269 |
T |
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| Q |
108 |
gcctatcgccatgagccttaccggtccctcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagtttcaccaaccacaatcccagt |
207 |
Q |
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| T |
41729270 |
gcctatcgccatgagccttaccggtccctcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagtttcaccaaccacaatcccagt |
41729369 |
T |
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| Q |
208 |
tgcatgatcaagcaaaatcccacttccaatcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctgaatcataacacccaaaatc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41729370 |
tgcatgatcaagcaaaatcccacttccaatcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctgaatcataacagccaaaatc |
41729469 |
T |
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| Q |
308 |
ttccttccatttg |
320 |
Q |
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| T |
41729470 |
ttccttccatttg |
41729482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 23158265 - 23158550
Alignment:
| Q |
8 |
acaactgaaccagcgccaattttagcaccatcaccaatcttaatattccccaaaatacaagttccagcgcctataagcaccccgtcaccaatctttggat |
107 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| || || | || || ||||||||||| |||| |
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| T |
23158265 |
acaacagaaccagcaccaatcttagcaccatcaccaatcttaatattccctaaaatacatgttccagcaccaatcaaaacaccatcaccaatcttaggat |
23158364 |
T |
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| Q |
108 |
gcctatcgccatgagccttaccggtccctcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagtttcaccaaccacaatcccagt |
207 |
Q |
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| T |
23158365 |
gtctatcaccacaaactttaccagttccacctaatgtaacattatgcaaaattgcaacattatttccaaccacagcagtttcaccaacaacaagacctgt |
23158464 |
T |
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| Q |
208 |
tgcatgatcaagcaaaatcccacttccaatcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctgaatca |
293 |
Q |
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| T |
23158465 |
tgcatgatccaacaaaatccctctaccaatcttagcaccaggatgaatatcaactgcaaaaacctcagaaaccctattttgaatca |
23158550 |
T |
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