View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818-Insertion-9 (Length: 274)
Name: NF4818-Insertion-9
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818-Insertion-9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 47052252 - 47051985
Alignment:
| Q |
7 |
actttcagggcacaattatcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagttttgccattgaaag |
106 |
Q |
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| T |
47052252 |
actttcagggcacaattatcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagttttgccattgaaag |
47052153 |
T |
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| Q |
107 |
gggagttggaagaatggatctactctttctaggtactccttataaacatcgcaccactcctcgcgatccttataaatttgaccttgccttgttttccaag |
206 |
Q |
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| T |
47052152 |
gggagttggaagaatggatctactctttctaggtactccttataaacattgcaccactcgtcgcgatccttataaatttgaccttgccttgttttccaag |
47052053 |
T |
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| Q |
207 |
actaatctttcaactctaaaccatttgtctcttgaaaattgtcttgtttacaatcccatcaatttcga |
274 |
Q |
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| T |
47052052 |
actaatctttcaactctaaaccatttgtctcttgaaaattgtcttgtttacaatcccatcaatttcga |
47051985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 48108456 - 48108210
Alignment:
| Q |
24 |
atcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagttttgccattgaaaggggagttggaagaatgg |
123 |
Q |
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| T |
48108456 |
atcgattctttccttgtgaacttctatataaatagtaaacacaacaacattattgatcaatggataagttttgcaattgcaaggggagttgtaaaagtgg |
48108357 |
T |
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| Q |
124 |
atctactctttctaggtactccttataaacatcgcaccactcctcgcgatccttataaatttgaccttgccttgttttccaagactaatctttcaactct |
223 |
Q |
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| T |
48108356 |
atctactctttaaaggaagcccttatgcacattgcactactcgacgcaatctatgtaaaattgactttgccttatttttggagaccaatgcttcaactct |
48108257 |
T |
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| Q |
224 |
aaaccatttgtctcttgaaaattgtcttgtttacaatcccatcaatt |
270 |
Q |
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| T |
48108256 |
aaaccacatatgtcttgaaaattgtattgttttccatcccaccaatt |
48108210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 47926944 - 47927065
Alignment:
| Q |
15 |
ggcacaattatcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagttttgccattgaaaggggagttg |
114 |
Q |
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| T |
47926944 |
ggcacagtgatcaattctttcctagtgagcttctatttaaattgtgaacaaagcaacacaattgatcaatggataagttttgcaattgcaaagggagttg |
47927043 |
T |
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| Q |
115 |
gaagaatggatctactctttct |
136 |
Q |
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| T |
47927044 |
gaatgatcgatttactctttct |
47927065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 39411263 - 39411371
Alignment:
| Q |
28 |
attctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagttttgccattgaaaggggagttggaagaatggatct |
127 |
Q |
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| T |
39411263 |
attctttcctagtgaacttctatttaaattgtgaacaaagcaacactattgatcaatggataagttttgcaattgcaatgggagttggaagaatcgattt |
39411362 |
T |
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| Q |
128 |
actctttct |
136 |
Q |
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| T |
39411363 |
actctttct |
39411371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 50458719 - 50458843
Alignment:
| Q |
15 |
ggcacaattatcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagttttgccattgaaaggggagttg |
114 |
Q |
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| T |
50458719 |
ggcacaaatattgattctttcgtagtgaatttttatttagattgtgaacaaagtaacaatattgatcaatggataagttttgcgattgcaagaggagttg |
50458818 |
T |
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| Q |
115 |
gaagaatggatctactctttctagg |
139 |
Q |
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| T |
50458819 |
aaagaatcaatctactttttctagg |
50458843 |
T |
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