View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818_high_5 (Length: 334)
Name: NF4818_high_5
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 41728854 - 41729177
Alignment:
| Q |
5 |
cagcaccacagactacactttgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcac |
104 |
Q |
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| T |
41728854 |
cagcaacacaaactacactatgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcac |
41728953 |
T |
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| Q |
105 |
atttaaataactcaattctgaatttccaaacataaaaaactgcagnnnnnnnnttcaagcctatactctagataacataatcataaaactcagaaatatg |
204 |
Q |
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| T |
41728954 |
atttaaataactcaattctgaatttccaaacataaaa--ctgcaaacaattttttcaagcctatactctagataacataatcataaaactcagaaatatg |
41729051 |
T |
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| Q |
205 |
tgcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtcctt |
304 |
Q |
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| T |
41729052 |
tgcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtcctt |
41729151 |
T |
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| Q |
305 |
ggaggaacttccttgatcacaactga |
330 |
Q |
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| T |
41729152 |
ggaggaacttccttgatcacaactga |
41729177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 327
Target Start/End: Original strand, 23158111 - 23158269
Alignment:
| Q |
169 |
actctagataacataatcataaaactcagaaatatgtgcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctcca |
268 |
Q |
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| T |
23158111 |
actctaaataacataatcagaccactcagaaatatatgaagtatggtccatagtagagctaggaatcttatccaacatgataggattatcttttccacca |
23158210 |
T |
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| Q |
269 |
atcaattttgccggattcccaaccaccgtagtccttggaggaacttccttgatcacaac |
327 |
Q |
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| T |
23158211 |
atcaacttagctggatttccaacagcagtagttcttggtggaacatccttcaacacaac |
23158269 |
T |
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