View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4818_low_2 (Length: 377)
Name: NF4818_low_2
Description: NF4818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4818_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 38677263 - 38677610
Alignment:
| Q |
19 |
aatttctcataatttgaatggttcaaattgttagtcatatcttccagccctgatacaaagttattgactaaattgaataatttttcaaattttttgaata |
118 |
Q |
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| T |
38677263 |
aatttctcataatttgaatggttcaaattgttagtcatatcttccagccctgatacaaagttattgactaaattgaataatttttcaaattttttgaata |
38677362 |
T |
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| Q |
119 |
atcaaaataaattaacccattgaacaaaatgtcacagaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgc |
218 |
Q |
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| T |
38677363 |
atcaaaataaattaacccattgaacaaaatgtcacagaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgc |
38677462 |
T |
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| Q |
219 |
aattcgtttacaatacccccaaaattgaagtgaacaatagcggcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaa |
318 |
Q |
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| T |
38677463 |
--ttcatttacaatacccccaaaattgaagtgaacaatagccgcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaa |
38677560 |
T |
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| Q |
319 |
gaaatatataataatccgattaagagaaaatcaaagtgttttagaataat |
368 |
Q |
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| T |
38677561 |
gaaatatataataatccgattaagagaaaatcaaagtgttttagaataat |
38677610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 38673466 - 38673509
Alignment:
| Q |
58 |
tcttccagccctgatacaaagttattgactaaattgaataattt |
101 |
Q |
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| T |
38673466 |
tcttccagcccagatacaaagttattgactacaatgaataattt |
38673509 |
T |
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