View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4819-Insertion-2 (Length: 668)
Name: NF4819-Insertion-2
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819-Insertion-2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 664
Target Start/End: Original strand, 47418736 - 47419392
Alignment:
| Q |
7 |
agttaacaataggcatcccatgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
47418736 |
agttaacaataggcatcccatgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgtattac |
47418835 |
T |
|
| Q |
107 |
acccaagtgatttagaccaatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47418836 |
acccaagtgatttagaccaatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttatt |
47418935 |
T |
|
| Q |
207 |
gtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacgg |
306 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
47418936 |
gtcccggaaaaatggctgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaatgg |
47419035 |
T |
|
| Q |
307 |
tggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47419036 |
tggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcact |
47419135 |
T |
|
| Q |
407 |
gatgtccatagttgaataggttggctcactctttacttggatagctgaagaagcattatgagaatggtctgcagctgcattcctgcttctctgatgcagt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
47419136 |
gatgtccatagttgaataggttggctcactctttacttggatagctgaagaagcattatgagaatggtctgcagctgcattccagcttctctgatgcagt |
47419235 |
T |
|
| Q |
507 |
tgtgctaatgcatcgggatcattaaattttgttccactggaagtaacagtagaaattcttacagggggctgctgtccaccagaagaacctgtgttggttt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47419236 |
tgtgctaatgcatcgggatcattaaattttgttccactggaagtaacagtagaaatccttacagggggctgctgtccaccagaagaacctgtgttggttt |
47419335 |
T |
|
| Q |
607 |
ttgtctac-agaaaaaggacggttcttagcataaacgttgaaaacctatctctaaccac |
664 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
47419336 |
ttgtctacaagaaaaaggacggttcttagcat-aacgttg-aaacctatctctaaccac |
47419392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 46 - 664
Target Start/End: Original strand, 47390415 - 47391029
Alignment:
| Q |
46 |
cagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattct |
145 |
Q |
| |
|
|||| |||||||||| |||| |||||| ||||| ||| ||||| | |||||| |||||| |||| |||||||||||||||||| || ||| ||||||| |
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|
| T |
47390415 |
cagtcgacacagatccacctggcattctcttaggatcattgaaagaactctgacgttctgcacctaagtgatttagaccaatgctcggatgtggaatttg |
47390514 |
T |
|
| Q |
146 |
ccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttcca |
245 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
47390515 |
ccttatgtgtgaatcatgaggatgaggttgtggtctgaaagatgatgatgaactagtggttgtcccggaaaaatggctgtagttaccaccactgcctcca |
47390614 |
T |
|
| Q |
246 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactgg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47390615 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactgg |
47390714 |
T |
|
| Q |
346 |
atgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactctttacttg |
445 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47390715 |
atgttggtaattgatttgattgcactactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactcttcacttg |
47390814 |
T |
|
| Q |
446 |
gatagctgaagaagcattatgagaatggtctgcagctgcattcctgcttctctgatgcagttgtgctaatgcatcgggatcattaaattttgttccactg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
47390815 |
gatagctgaagaagcattatgagaatggtctgcagcagcattcatacttctctgatgcagttgtgctaatgcatggggatcgttaaattttgttccactg |
47390914 |
T |
|
| Q |
546 |
gaagtaacagtagaaattcttacagggggctgctgtccaccagaagaacctgtgttggtttttgtctac-agaaaaaggacggttcttagcataaacgtt |
644 |
Q |
| |
|
||||||||||| | || |||||||||||||||||| |||||||||||||| ||||||||||||| | | |||||||| |||||||||||| |||||| |
|
|
| T |
47390915 |
gaagtaacagttggcatccttacagggggctgctgt---ccagaagaacctgtattggtttttgtctgcaataaaaaggatggttcttagcat-aacgtt |
47391010 |
T |
|
| Q |
645 |
gaaaacctatctctaaccac |
664 |
Q |
| |
|
| ||| |||||||||||||| |
|
|
| T |
47391011 |
g-aaatctatctctaaccac |
47391029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 174 - 648
Target Start/End: Original strand, 47421362 - 47421829
Alignment:
| Q |
174 |
tgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgtt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| | ||||||| || |||||| | |||||||||| ||||| |||| |
|
|
| T |
47421362 |
tgtggtctgagagatgataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgtt |
47421461 |
T |
|
| Q |
274 |
gttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgac |
373 |
Q |
| |
|
||||||| |||| || |||||| || ||| | || ||||||||||||||||||| | |||||||||||| | |||||||| ||| || ||| || |
|
|
| T |
47421462 |
gttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactac |
47421561 |
T |
|
| Q |
374 |
tcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactctttacttggatagctgaagaagcattatgagaatgg |
473 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47421562 |
tcgaacatcatgttcctgagattttttagcactgatgtccatagttgaatagcttggctcactcttcacttggatagctgaagaagcattatgagaatgg |
47421661 |
T |
|
| Q |
474 |
tctgcagctgcattcctgcttctctgatgcagttgtgctaatgcatcgggatcattaaattttgttccactggaagtaacagtagaaattcttacagggg |
573 |
Q |
| |
|
|||||||| |||||| | ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
47421662 |
tctgcagcagcattcgtacttctctgatgtagttgtgctaatgcatcaggaccattaaattttgttccactggaagtaacagttggcatccttacagggg |
47421761 |
T |
|
| Q |
574 |
gctgctgtccaccagaagaacctgtgttggtttttgtctacagaaaaaggacggttcttagcataaacgttgaaa |
648 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
47421762 |
gctgctgt---ccagaagaacctgtattggtttttgt---aagaaaaaggatggttcttagcat-aacgttgaaa |
47421829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 57 - 648
Target Start/End: Original strand, 47407540 - 47408128
Alignment:
| Q |
57 |
gatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgta |
156 |
Q |
| |
|
|||| ||||||||||| ||||| ||| |||||| ||||||| ||||||||||||||||||| ||||||||| || ||| ||||||||||||| ||||| |
|
|
| T |
47407540 |
gatccacctcgcattctcttaggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
47407639 |
T |
|
| Q |
157 |
aatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgg |
256 |
Q |
| |
|
||| || | ||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | || |||| ||||||||| || |||||| |||||| |
|
|
| T |
47407640 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcgatgg |
47407739 |
T |
|
| Q |
257 |
gaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaat |
356 |
Q |
| |
|
||||||||||| ||||||||||| |||| || |||||| ||||||| | || ||||||||||||||| ||| | ||||||| |||| ||||| |
|
|
| T |
47407740 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgacaaatggtgttagaactagatggcagtaat |
47407839 |
T |
|
| Q |
357 |
tgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccatagttgaataggttggctcactctttacttggatagctgaag |
456 |
Q |
| |
|
||| ||| || ||| || |||||||||||||||||| |||||||| ||| ||||||||||||||||| || ||| || |||| |||||||| |||||| |
|
|
| T |
47407840 |
tgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtccatagttgaataagtcggcccagtcttcacttggattactgaag |
47407939 |
T |
|
| Q |
457 |
aagcattatgagaatggtctgcagctgcattcctgcttctctgatgcagttgtgctaatgcatcgggatcattaaattttgttccactggaagtaacagt |
556 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||| | |||||| ||||||||| | ||| ||||| |||||||||||||| || | | | ||||||||||| |
|
|
| T |
47407940 |
aattattatgagaatggtccgcagcagcattcatacttctcggatgcagttttactattgcatggggatcattaaattgtgctggaattgaagtaacagt |
47408039 |
T |
|
| Q |
557 |
agaaattcttacagggggctgctgtccaccagaagaacctgtgttggtttttgtctac-agaaaaaggacggttcttagcataaacgttgaaa |
648 |
Q |
| |
|
| || |||| |||| |||| ||| ||||||||||| || |||| |||| ||| | ||||||| | |||||||||||| |||||||||| |
|
|
| T |
47408040 |
tggcatgcttatagggtgctgttgt---ccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcat-aacgttgaaa |
47408128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 46796380 - 46796313
Alignment:
| Q |
408 |
atgtccatagttgaataggttggctcactctttacttggatagctgaagaagcattatgagaatggtc |
475 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||| | ||||||||||| | ||||||||||||| |
|
|
| T |
46796380 |
atgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtc |
46796313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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