View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4819-Insertion-3 (Length: 497)
Name: NF4819-Insertion-3
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819-Insertion-3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Complemental strand, 43940105 - 43939614
Alignment:
| Q |
6 |
cactatgtacccaaaaaacagttcatagaatatttaggtaactatgtcaacaacttcaacatcaaccctatatacaacagagctgttgagttagcagagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43940105 |
cactatgtacccaaaaaacagttcatagaatatttaggtaactatgtcaacaacttcaacatcaaccctatatacaacagagctgttgagttagcagagt |
43940006 |
T |
|
| Q |
106 |
atgttgatgatgatgagaagaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43940005 |
atgttgatgatgatgagaagaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtgg |
43939906 |
T |
|
| Q |
206 |
tgaaacagctgaacctcgtgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939905 |
tgaaacagctgaacctcgtgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaa |
43939806 |
T |
|
| Q |
306 |
gatgaacatgttcttgttgttggttctggtaattctggtatggagattgctttagatttggctaattttggtgctaaaccttcaatcattgttagaagcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939805 |
gatgaacatgttcttgttgttggttctggtaattctggtatggagattgctttagatttggctaattttggtgctaaaccttcaatcattgttagaagcc |
43939706 |
T |
|
| Q |
406 |
cggtattaacaaaagtctatgttccttattctttttctctttaattagatctttactagtttaggctagctaaattatggtatggtatgtga |
497 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939705 |
cggtattaacaaaattctatgttccttattctttttctctttaattagatctttactagtttaggctagctaaattatggtatggtatgtga |
43939614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 124 - 355
Target Start/End: Complemental strand, 43928078 - 43927847
Alignment:
| Q |
124 |
agaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcg |
223 |
Q |
| |
|
||||||||| ||| || ||| |||||||| |||||||| |||||||| ||| | |||||| |||||||| |||||||||||||| ||| ||| |
|
|
| T |
43928078 |
agaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaactagtgacccttt |
43927979 |
T |
|
| Q |
224 |
tgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgtt |
323 |
Q |
| |
|
|||||||| |||| |||||| ||| ||| | |||||||| |||||||||||| ||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43927978 |
tgtacctgaaattgatgggttgaagagttttactgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgttcttgtt |
43927879 |
T |
|
| Q |
324 |
gttggttctggtaattctggtatggagattgc |
355 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| |
|
|
| T |
43927878 |
gttgggtctgggaattctggtatggaaattgc |
43927847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 15608069 - 15608285
Alignment:
| Q |
146 |
gaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcgtgtacctgtggttgaagggttg |
245 |
Q |
| |
|
||||||| |||||||||||||||||| ||| || |||||| ||||| | |||||||| ||||| ||||||| | | |||| ||||||||| | |
|
|
| T |
15608069 |
gaataaggattctggtgaagttgaggaatatgatggaaggtttttggtaatggctagtggcgaaactagtgaaccttttctgcctgaaattgaagggtag |
15608168 |
T |
|
| Q |
246 |
gagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaa----catgttcttgttgttggttctggtaattct |
341 |
Q |
| |
|
||| | ||| ||| |||| |||||||||||| ||| || |||| |||||||||||||||||| ||||||||| ||||||| ||||| |||||| |
|
|
| T |
15608169 |
aagagatgcaatggggaagtgattcattcaactgggtttaagaatgagaaagagtttaaagatgaattaacatgttctttttgttggatctgggaattct |
15608268 |
T |
|
| Q |
342 |
ggtatggagattgcttt |
358 |
Q |
| |
|
|| ||||| | |||||| |
|
|
| T |
15608269 |
ggcatggaaactgcttt |
15608285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University