View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4819-Insertion-4 (Length: 492)
Name: NF4819-Insertion-4
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 35797204 - 35796953
Alignment:
| Q |
7 |
aaaatttacaccgacattgtaccaaaattaaactcagctaaaaaacata--cctttcttgtaattagtcatgttaaagattttgagcttagtataaacac |
104 |
Q |
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| T |
35797204 |
aaaatttacaccgacattgtaccaaaattaaattcaactaaaaaacatatacctttattgtaattagtcatgttaaagattttgagcttagtataaacac |
35797105 |
T |
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| Q |
105 |
cccaaaatctcttaggacgaacttgattaggattttccagtaaactaattttctcaactatccacccatcagcctacaacaacacataaacaaattgatt |
204 |
Q |
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| T |
35797104 |
cccaaaatctcttaggacgaacttgattaggattttccagtaaactaattttctcaactatccacccatcagcctacaacaacacataaacaaattgatt |
35797005 |
T |
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| Q |
205 |
aacccataaaccctaattaaaatatatgaattaaatcaacaatgctgatgaa |
256 |
Q |
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| T |
35797004 |
aacccataaaccctaattaaaatatatgaattaaatcaacaatgctgatgaa |
35796953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 306 - 492
Target Start/End: Complemental strand, 35796904 - 35796718
Alignment:
| Q |
306 |
ccttgaggagatttttggcgtaatcagaaacaccatcagagactaaaacaaccatatccttgtttgatcgagtatcgcgtatcgattttccaagaaccct |
405 |
Q |
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| T |
35796904 |
ccttgaggagatttttagcgtaatcagaaacaccatcagagactaaaacaaccatatccttgtttgatcgagtatcgcgtatcgattttccaagaaccct |
35796805 |
T |
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| Q |
406 |
aacgcctaacaagaattcatctccgtataacaaactcgcgtatgccacttccgttctctttgattcagatcccaatgagttaactga |
492 |
Q |
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| T |
35796804 |
aacgcctaacaagaattcatctccgtataacaaactcgcgtatgccacttccgttctctttgattcagatcccaatgagttaactga |
35796718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 47717190 - 47717321
Alignment:
| Q |
54 |
tacctttcttgtaattagtcatgttaaagattttgagcttagtataaacaccccaaaatctcttaggacgaacttgattaggattttccagtaaactaat |
153 |
Q |
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||||||| ||||| || |||||||| || ||||| | |||||| |||||||||||||||||||| |||||||| |||||||||| | |||||| |||| |
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| T |
47717190 |
taccttttttgtagttggtcatgttgaatattttcaacttagtgtaaacaccccaaaatctcttgggacgaacacgattaggattggcaagtaaagtaat |
47717289 |
T |
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| Q |
154 |
tttctcaactatccacccatcagcctacaaca |
185 |
Q |
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| T |
47717290 |
ctgctcaactatccaaccatcagcctacaaca |
47717321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 435
Target Start/End: Original strand, 47717415 - 47717533
Alignment:
| Q |
317 |
tttttggcgtaatcagaaacaccatcagagactaaaacaaccatatccttgtttgatcgagtatcgcgtatcgattttccaagaaccctaacgcctaaca |
416 |
Q |
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| T |
47717415 |
tttttggcgaaattggaaacaccatcagagaccaaaacaaccatgtctttattggatctggtgtcgcgtatggatttaccgagaactcgaacgcccaata |
47717514 |
T |
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| Q |
417 |
agaattcatctccgtataa |
435 |
Q |
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||||||||||||||||||| |
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| T |
47717515 |
agaattcatctccgtataa |
47717533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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