View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4819_high_1 (Length: 603)
Name: NF4819_high_1
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 376 - 586
Target Start/End: Complemental strand, 24360136 - 24359926
Alignment:
| Q |
376 |
tcccaccctatgaagcttctttcttattattatatatatacatatactttctctttataaatcctaattctttcatctctacatcaaggtgagggtgaag |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360136 |
tcccaccctatgaagcttctttcttattattatatatatacatatactttctctttataaatcctaattctttcatctctacatcaaggtgagggtgaag |
24360037 |
T |
|
| Q |
476 |
gattcaatagtacaatgaggaagccagatattgcatctggaaaaaacaacacaaacaataaacttagaaaaggattgtggtcaccagaggaagatgagaa |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360036 |
gattcaatagtacaatgaggaagccagatattgcatctggaaaaaacaacacaaacaataaacttagaaaaggattgtggtcaccagaggaagatgagaa |
24359937 |
T |
|
| Q |
576 |
gcttatgaact |
586 |
Q |
| |
|
||||||||||| |
|
|
| T |
24359936 |
gcttatgaact |
24359926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 24360262 - 24360164
Alignment:
| Q |
250 |
caaaccgttttctttttcaactagactcatcaaccaaccaactcctctttctgtttctctctcactactcttccctaatttgtaagcaaaccccacaac |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360262 |
caaaccgttttctttttcaactagactcatcaaccaaccaactcctctttctgtttctctctcactactcttccctaatttgtaagcaaaccccacaac |
24360164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24360551 - 24360499
Alignment:
| Q |
1 |
atcattatgtgaagtggaagcaaataacttggcttcattataaaacaaagttg |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360551 |
atcattatgtgaagtggaagcaaataacttggcttcattataaaacaaagttg |
24360499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 24360347 - 24360300
Alignment:
| Q |
169 |
caaggccatggagtcaaagacaagaagacacacacacatctaaatatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360347 |
caaggccatggagtcaaagacaagaagacacacacacatctaaatatt |
24360300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 24360420 - 24360376
Alignment:
| Q |
96 |
ctggcacactgtgattcatgtatgatgattaccttgtgagtgaag |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360420 |
ctggcacactgtgattcatgtatgatgattaccttgtgagtgaag |
24360376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 586
Target Start/End: Complemental strand, 41831950 - 41831902
Alignment:
| Q |
538 |
cttagaaaaggattgtggtcaccagaggaagatgagaagcttatgaact |
586 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
41831950 |
cttagaaaaggtttgtggtcaccagaagaagatgagaaacttatgaact |
41831902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 41832479 - 41832434
Alignment:
| Q |
4 |
attatgtgaagtggaagcaaataacttggcttcattataaaacaaa |
49 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
41832479 |
attatgtgaagtggaagcaaaaaacttagcttggttataaaacaaa |
41832434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University