View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4819_high_3 (Length: 297)
Name: NF4819_high_3
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 81 - 285
Target Start/End: Complemental strand, 26456707 - 26456503
Alignment:
| Q |
81 |
cacttctaatcaatatttgtcagttagatataataagcgcggcaccgatataaataattctcttaaccgtacagagcaacaatccaatccaagaaggtgc |
180 |
Q |
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| T |
26456707 |
cacttctaatcaatatttgtcagttagatataataagcgcggcaccgatataaataattctcttaaccgtacagagcaacaatccaatccaagaaggtgc |
26456608 |
T |
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| Q |
181 |
taagagatggacatgcattctaattaagcactaagtacagcctcatgatattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaat |
280 |
Q |
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| T |
26456607 |
taagagatggacatgcattctaattaagcactaagtacggcctggtgatattggcttaagatttaaaagtgtgctcctcctcgtagtctcagatttgaat |
26456508 |
T |
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| Q |
281 |
ctctc |
285 |
Q |
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||||| |
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| T |
26456507 |
ctctc |
26456503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 27266782 - 27266841
Alignment:
| Q |
228 |
atattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctctctg |
287 |
Q |
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| T |
27266782 |
atattgacttggaatttgaaagtatgctcattctcaaaatctcaggtttgattctctctg |
27266841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 27255353 - 27255415
Alignment:
| Q |
225 |
atgatattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctctctg |
287 |
Q |
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| T |
27255353 |
atgatattgacttggaatttggaagtatactccttctcaaagtctcaggtttgattttctctg |
27255415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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