View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4819_low_2 (Length: 376)
Name: NF4819_low_2
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 134 - 368
Target Start/End: Complemental strand, 14184468 - 14184234
Alignment:
| Q |
134 |
cttgaagacttctttctgtcttgttgggatattcgggagagcttcactaagatcaatcatcagattttgttaagagcaacaagacaaatgagcttgaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
14184468 |
cttgaagacttctttctgtcttgttgggacattcgggagagcatcactaagatcaatcatcagattttgttaacagcaataagacaaatgagcttgaaca |
14184369 |
T |
|
| Q |
234 |
tcgtattctcatccaaaatttcaaagggttctctcgcaaaattcctacatgcaaatgcatgtattgtgttaaaaaatacattcgtctaataatagagagc |
333 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14184368 |
tcatattctaacccaaaatttcaaagggttctctcgcaaaattccaacatgcaaatgcatgtattgtgttaaaaaatacattcgtccaataatagagagc |
14184269 |
T |
|
| Q |
334 |
tactccctccatcttaaaataatcgagtcatttgt |
368 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
14184268 |
tactccatccatctcaaaataactgagtcatttgt |
14184234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 14184581 - 14184494
Alignment:
| Q |
20 |
tgaaccgtgggtaagtttgatatattatggcctcaataaacctttgaaggaacctacatttttgcatcaaaataaaagagggaaaccg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
14184581 |
tgaaccgtgggtaagtttgatatattatggcctcaataaaccttcgaaggaaccaacatttttgcatcaaaatgaaagggggaaaccg |
14184494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University