View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4819_low_4 (Length: 291)
Name: NF4819_low_4
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 26456500 - 26456218
Alignment:
| Q |
1 |
atgttaatttgagtggtctaattctggaaaattaatgaaaagtgctctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaa |
100 |
Q |
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| T |
26456500 |
atgttaatttgagtggtctaattctggaaaattaatggaaagtgctctctctccatc-ttttcactagttacttgttttgtaagttgctagctgtagaaa |
26456402 |
T |
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| Q |
101 |
gattcaaattcaaataaaggaattgaaagaacgtaattgtttgctcttttaactacaactacaagcaaataaataagacaatacagtacaatatttatac |
200 |
Q |
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| T |
26456401 |
gattcaaattcaaataaaggagttgaaagaacgtaattgtttgctcttttaactacaactacaagcaaataaataagacaatacagtacaatatttatac |
26456302 |
T |
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| Q |
201 |
cagctagatgggatggttgaactgcatagcatataatatatgatattgtacgtgcaagaaattgcattatagtagcctatgtta |
284 |
Q |
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| T |
26456301 |
cagctagatgggatggttgaactgcatagcatataatatatgatattgtacgtgcaagaaattgcattatagtagcctatgtta |
26456218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 26450098 - 26450014
Alignment:
| Q |
20 |
aattctggaaaattaatgaaaagtgc--tctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaaga |
102 |
Q |
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| T |
26450098 |
aattcttgaaaattaatggaaagtaccttctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaaga |
26450014 |
T |
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