View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4819_low_5 (Length: 263)
Name: NF4819_low_5
Description: NF4819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4819_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 1824054 - 1823819
Alignment:
| Q |
18 |
atttttgtattattttccagtgctatacttgtaacaggagatccacctatcattccctaaatgcatttaaaaataaattgtatgttacatatgtttatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1824054 |
atttttgtattattttccagtgctatacttgtaacaggagatccacctatcattccctaaatgcatttaaaaataaattgtatgttacatatgtttatag |
1823955 |
T |
|
| Q |
118 |
tacaataaacataatgaatttaattataaaaaagaagaataagaagattcatcatttactattaagattatgtatggctttgctccagctgcatttcctg |
217 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
1823954 |
tacaataaacatggtggattttattataaaaaagaagaataagaagattcatcatttactattaaagttatgtatggctttggtccagctgcatttcctg |
1823855 |
T |
|
| Q |
218 |
cagtgtcattgaagtacaaggcttgtgtaagtataa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1823854 |
cagtgtcattgaagtacaaggcttgtgtaagtataa |
1823819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University