View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4820-Insertion-1 (Length: 762)

Name: NF4820-Insertion-1
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4820-Insertion-1
NF4820-Insertion-1
[»] chr2 (1 HSPs)
chr2 (8-762)||(41358391-41359134)


Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 762
Target Start/End: Original strand, 41358391 - 41359134
Alignment:
Q  8 ggactaaccacttacgcttgatttcaagaatctttccctcaagtgttagtctacatcacttcacttgcatcttcattaacaaccaattaaacacaccttc 107  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  41358391 ggactaaccacttacgcttgaatgcaagaatctttccctcaagtgttagtctacatcacctcacttgcatcttcattaccaaccaattaaacacaccttc 41358490  T
Q  108 tgactatactctcaagaagactttcgacacatggatccaatatcatatttcccttctgctctcccaccaaggtgagctataaggctctggtaccacttgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358491 tgactatactctcaagaagactttcgacacatggatccaatatcatatttctcttctgctctcccaccaaggtgagctataaggctctggtaccacttgt 41358590  T
Q  208 ttccgagtgaggggaagcgccgagagcaacaggctaatgatagaggatcatcgatacaccacatctttaaccaaaactttcgatattgagtatataaatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  41358591 ttccgagtgaggggaagcgccgagagcaacaggctaatgatagaggatcatcgatacaccacatctttaaccaaaaccttcgatattgagtatatagatt 41358690  T
Q  308 acctctctatctaatatccgagttcattcataaatagtttcctaaagcttgtatatttcttatgaattaaatgtgagttccatgacttgagaaatttttt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  41358691 acctctctatctaatatccgagttcattcataaatagtttcctaaagcatgtatatttcttatgaattaaatgcgatttccatgacttgagaaatttttt 41358790  T
Q  408 gagttccgtatcaannnnnnnnnnaaacaaatatatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtg 507  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358791 gagttccgtatcaa-ttttttttaaaacaaatatatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtg 41358889  T
Q  508 tgtctaaatcagatgaagaatttgt---agaaggagaatcactgagcaaggtgttaaatgacattgatccagagttgttccaattactaacaatctccat 604  Q
    |||||||||||||||||||||||||   ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41358890 tgtctaaatcagatgaagaatttgtagaagaagaagaaccactaagcaaggtgttaaatgacattgatccagagttgttcccattactaacaatctccat 41358989  T
Q  605 ccttgcatgcagtggctgtaaacccagtggccacccctcattctaacatcaaatccattgtat-nnnnnnnnnncatgaatacaatgaaaattcatgagg 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||             |    
T  41358990 ccttgcatgcagtggctgtaaacccagtggccacccctcattctaacatcaaatccattgtataaaaaaaaaaacatgaatacaat-------------g 41359076  T
Q  704 aaaattccaaaaactaacatatgaatataatagtccaaaagagtacctgttgagccatg 762  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  41359077 aaaattccaaaaactaatatatgaatataatagt-caaaagagtacctgttgagccatg 41359134  T

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