View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4820-Insertion-2 (Length: 620)
Name: NF4820-Insertion-2
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4820-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 349 - 543
Target Start/End: Original strand, 3302332 - 3302525
Alignment:
| Q |
349 |
cttttttatgtttcatatccattcattaacttatttgacttctaatgtggattatttggatttactttgtggttaattaggactaattaggtgttaatta |
448 |
Q |
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| T |
3302332 |
cttttttatgtt-catatccattcattaatttatttgacttctaatgtggattatttggatttactttgtggttaattaggactaattaggtgttaatta |
3302430 |
T |
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| Q |
449 |
gctatattataggttagtaatgaaagtttaaatccctattattacgtatagaactctcaaatgtccataaataacaatggacattatagaaagct |
543 |
Q |
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| T |
3302431 |
gctatattataggttagtaatgaaagtttaaatccctattattaggtatagaactttcaaatgtcaataaataacaatggacattatagaaagct |
3302525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 121 - 288
Target Start/End: Original strand, 3302112 - 3302279
Alignment:
| Q |
121 |
ccgaggttctttgatttggctatcaaataaaataaaaatttgcatgttgtcatgtgctatttgttccccacgagatatatattttacattgnnnnnnnnt |
220 |
Q |
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| T |
3302112 |
ccgaggttctttgatttggctatcaaataaaataaaaatttgcatgttgtcatgtgctatttgttccccacgagatatatattttacattgaaaaaaaat |
3302211 |
T |
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| Q |
221 |
tcagtttacaatatgatgtcaagtccatggtctaatgtgaatgagacatcaaacatattgataataaa |
288 |
Q |
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| T |
3302212 |
tcagtttacaatgtgatgtcaagtccatggtctaatgtgaatgagacatcaaacatattgataataaa |
3302279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 3301999 - 3302073
Alignment:
| Q |
8 |
cttttatgtacttgctattgttttctctccttagtgtgagatgtgatgtgtcttaacatgatttgcatgcatgtg |
82 |
Q |
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| T |
3301999 |
cttttatgtacttgctattgttttctctccttagtgtgagatgtgatgtgtcttaacatgatttgcatgcatgtg |
3302073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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