View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4820-Insertion-7 (Length: 122)

Name: NF4820-Insertion-7
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4820-Insertion-7
NF4820-Insertion-7
[»] chr3 (21 HSPs)
chr3 (7-122)||(28508553-28508668)
chr3 (7-118)||(28479370-28479481)
chr3 (7-118)||(26109846-26109957)
chr3 (7-118)||(26204138-26204249)
chr3 (17-118)||(26232200-26232301)
chr3 (8-118)||(26176675-26176785)
chr3 (20-118)||(26126636-26126734)
chr3 (17-118)||(27430507-27430608)
chr3 (17-118)||(28057687-28057788)
chr3 (17-118)||(28068112-28068213)
chr3 (7-118)||(26138730-26138841)
chr3 (17-118)||(18078756-18078857)
chr3 (11-118)||(17744029-17744136)
chr3 (11-118)||(19045349-19045456)
chr3 (11-118)||(28136819-28136926)
chr3 (17-114)||(27777047-27777144)
chr3 (17-118)||(28187161-28187262)
chr3 (17-117)||(11421727-11421827)
chr3 (17-118)||(8538640-8538741)
chr3 (17-118)||(28163151-28163252)
chr3 (54-118)||(27458389-27458453)
[»] scaffold0257 (1 HSPs)
scaffold0257 (17-118)||(19602-19703)
[»] chr7 (1 HSPs)
chr7 (11-71)||(8692541-8692601)
[»] scaffold0922 (1 HSPs)
scaffold0922 (17-118)||(2243-2341)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 4e-57; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 4e-57
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 28508553 - 28508668
Alignment:
Q  7 atgggtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattc 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508553 atgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattc 28508652  T
Q  107 ttaacaaggaaaacag 122  Q
    ||||||||||||||||    
T  28508653 ttaacaaggaaaacag 28508668  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 28479370 - 28479481
Alignment:
Q  7 atgggtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattc 106  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||    
T  28479370 atgggtttcaaggaatttcaatagttcggctagtaaattgtaggcacaacccttgtatctattactcagtgcaatgtcctttaaacgaacagaaggattc 28479469  T
Q  107 ttaacaaggaaa 118  Q
     |||||||||||    
T  28479470 ctaacaaggaaa 28479481  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 26109846 - 26109957
Alignment:
Q  7 atgggtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattc 106  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||| | |||||||||| |    
T  26109846 atgggttttgaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgc 26109945  T
Q  107 ttaacaaggaaa 118  Q
    ||||||| ||||    
T  26109946 ttaacaaagaaa 26109957  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 26204138 - 26204249
Alignment:
Q  7 atgggtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattc 106  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||| | |||||||||| |    
T  26204138 atgggttttgaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgc 26204237  T
Q  107 ttaacaaggaaa 118  Q
    ||||||| ||||    
T  26204238 ttaacaaagaaa 26204249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 26232200 - 26232301
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| || ||| | ||||||||||||||||||| ||    
T  26232200 aggaatttcagtagttcagctaataaattgtaggcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggattcttaacaaaga 26232299  T
Q  117 aa 118  Q
    ||    
T  26232300 aa 26232301  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26176675 - 26176785
Alignment:
Q  8 tgggtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattct 107  Q
    |||||||  ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||| || ||| | |||||||||| ||    
T  26176675 tgggttttgaggaatttcaacagttcagctagtaaattgtaagcacaacccttgtatctattactaagtgaagtgtctttaaaacggacagaaggatgct 26176774  T
Q  108 taacaaggaaa 118  Q
    |||||| ||||    
T  26176775 taacaaagaaa 26176785  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 26126636 - 26126734
Alignment:
Q  20 aatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa 118  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||| || ||| | |||||||||| |||||||| ||||    
T  26126636 aatttcaacagttcagctagtaaattgtaagcacaacccttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgcttaacaaagaaa 26126734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 27430507 - 27430608
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  | ||| ||||| ||||||||||||| ||||| | || || |||||| |||||||||||||||| |||||||||||    
T  27430507 aggaatttcaatagctcagctaggcagttgtaggcataacccttgtatctgttactcaatgaagggtcctttaaatgaacagaaggatgcttaacaagga 27430606  T
Q  117 aa 118  Q
    ||    
T  27430607 aa 27430608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28057788 - 28057687
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  ||||| ||||| ||||||||||||| ||||| | || ||||||||||||| ||||||||||||  ||||||| ||    
T  28057788 aggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaaga 28057689  T
Q  117 aa 118  Q
    ||    
T  28057688 aa 28057687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28068213 - 28068112
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  ||||| ||||| ||||||||||||| ||||| | || ||||||||||||| ||||||||||||  ||||||| ||    
T  28068213 aggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaaga 28068114  T
Q  117 aa 118  Q
    ||    
T  28068113 aa 28068112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 26138730 - 26138841
Alignment:
Q  7 atgggtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattc 106  Q
    ||||||||  |||||||||||||||| ||||||||  ||| ||||||||||||||||| |||||||||||| |||||| || |||   | |||||||| |    
T  26138730 atgggttttgaggaatttcaatagtttagctagtacgttgtaggcacaacccttgtatgtattactaagtgaagtgtcttttaaacagatagaaggatgc 26138829  T
Q  107 ttaacaaggaaa 118  Q
    ||||||| ||||    
T  26138830 ttaacaaagaaa 26138841  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 18078756 - 18078857
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  ||||| ||||| ||||||||||||| ||||| | || ||||||||| ||  |||| |||||||||||||||| ||    
T  18078756 aggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtcctttaagagaactgaaggattcttaacaaaga 18078855  T
Q  117 aa 118  Q
    ||    
T  18078856 aa 18078857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 17744029 - 17744136
Alignment:
Q  11 gtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaa 110  Q
    |||| ||||||||||||||| ||||||||  ||||| ||||| ||||||||||||| ||||| | || ||||||||| ||| |||  ||||||| |||||    
T  17744029 gtttgaaggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtcctttaaaagaattgaaggatgcttaa 17744128  T
Q  111 caaggaaa 118  Q
    ||| ||||    
T  17744129 caaagaaa 17744136  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 19045349 - 19045456
Alignment:
Q  11 gtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaa 110  Q
    |||| ||||||||||||||| ||||||||  ||||| ||||| ||||||||||||| ||||| | || ||||||||| ||| |||  ||||||| |||||    
T  19045349 gtttgaaggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtcctttaaaagaattgaaggatgcttaa 19045448  T
Q  111 caaggaaa 118  Q
    ||| ||||    
T  19045449 caaagaaa 19045456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 28136926 - 28136819
Alignment:
Q  11 gtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaa 110  Q
    |||||||||||||||||||| || || | ||| ||| | |||||||||||| |||||||||  |||| | |||| || ||| ||||||||||||| ||||    
T  28136926 gtttcaaggaatttcaatagctctgccaataagttgtaagcacaacccttgaatctattacgcagtgaattgtcttttaaacgaacagaaggatttttaa 28136827  T
Q  111 caaggaaa 118  Q
    ||||||||    
T  28136826 caaggaaa 28136819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 27777144 - 27777047
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaag 114  Q
    |||||||||||||| ||||| ||  | ||| ||| | ||| ||||||||||||||| |||| ||||||| ||||| ||||||||||||| ||| ||||    
T  27777144 aggaatttcaatagctcagcaagacagttgtaggaataactcttgtatctattactcagtgaagtgtccctcaaaagaacagaaggattgttatcaag 27777047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28187262 - 28187161
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  | ||| ||||| ||||||||||||| ||||| | || |||||| || ||| |||| ||||||| |||||||| ||    
T  28187262 aggaatttcaatagctcagctaggcagttgtaggcataacccttgtatctgttactcaatgaagtgtcgtttaaaagaaccgaaggatgcttaacaaaga 28187163  T
Q  117 aa 118  Q
    ||    
T  28187162 aa 28187161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 11421827 - 11421727
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  ||||| ||||| |||||||||||||  |||| | || ||||||| | | | ||||||| |||| |||||||||||    
T  11421827 aggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgctactcaatgaagtgtcccttagaagaacagacggatgcttaacaagga 11421728  T
Q  117 a 117  Q
    |    
T  11421727 a 11421727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 8538640 - 8538741
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  | ||| ||||| ||||||||||||| ||||| |||| || |||| | ||| |||  |||||||  ||||||||||    
T  8538640 aggaatttcaatagctcagctagacagttgtaggcataacccttgtatctgttacttagtgaagcgtccgttaaaagaattgaaggatggttaacaagga 8538739  T
Q  117 aa 118  Q
    ||    
T  8538740 aa 8538741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28163252 - 28163151
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| || |||||  ||||| ||| | ||||||||||||| ||||| | || |||||| || ||| ||||  |||||| |||||||| ||    
T  28163252 aggaatttcaatagctccgctagacaattgtaggtataacccttgtatctgttactcaatgaagtgtcgtttaaaagaaccaaaggatgcttaacaaaga 28163153  T
Q  117 aa 118  Q
    ||    
T  28163152 aa 28163151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 27458389 - 27458453
Alignment:
Q  54 aacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa 118  Q
    ||||||||||||||||||| ||||  |||||||| ||| |||  ||||| | |||||||||||||    
T  27458389 aacccttgtatctattactcagtgatgtgtcctttaaaagaagtgaagggtgcttaacaaggaaa 27458453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 19703 - 19602
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  ||||| ||||| ||||||||||||| ||||| | || ||||||||||||| ||||||||||||  ||||||| ||    
T  19703 aggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaaga 19604  T
Q  117 aa 118  Q
    ||    
T  19603 aa 19602  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 8692541 - 8692601
Alignment:
Q  11 gtttcaaggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattac 71  Q
    |||||||||||||||||||| ||||| ||||| ||| |||||||||||||| |||||||||    
T  8692541 gtttcaaggaatttcaatagctcagccagtaagttgtaggcacaacccttgaatctattac 8692601  T

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Target: scaffold0922 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 2341 - 2243
Alignment:
Q  17 aggaatttcaatagttcagctagtaaattgcaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaagga 116  Q
    |||||||||||||| ||||||||  | ||| ||||| |||||||| |||| ||||| | || ||||||| | |   |||| |||||||||||||| ||||    
T  2341 aggaatttcaatagctcagctagacagttgtaggcataacccttgaatctgttactcaatgaagtgtccctta---gaactgaaggattcttaactagga 2245  T

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