View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4820_high_10 (Length: 312)
Name: NF4820_high_10
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4820_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 731918 - 732121
Alignment:
| Q |
1 |
catattgctttaattggctttgtgcatttaatgtacttcaaacttagtttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
731918 |
catattgctttaattggctttgtgcatttaatgtacttcaaacttaatttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattctta |
732017 |
T |
|
| Q |
101 |
gttaactgtaaaactgcttttaccagtttaatgacttgaattgaaatttaataaagataaagattgatgcttctgcatgtgtatttgattcatccaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
732018 |
gttaactgtaaaactgcttttaccagtttaatgacttgaattgaaatttaataaagataaagattgatgcttctgcatgtgtatttgattcatccaaaaa |
732117 |
T |
|
| Q |
201 |
ctaa |
204 |
Q |
| |
|
|||| |
|
|
| T |
732118 |
ctaa |
732121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 686255 - 686056
Alignment:
| Q |
1 |
catattgctttaattggctttgtgcatttaatgtacttcaaacttagtttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
686255 |
catattgctttaattggctttgtgcatttaatgtacttcaaacttaatttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattctta |
686156 |
T |
|
| Q |
101 |
gttaactgtaaaactgcttttaccagtttaatgacttgaattgaaatttaataaagataaagattgatgcttctgcatgtgtatttgattcatccaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
686155 |
gttaactgtaaaactgcttttaccagtttaatgacttgaattgaaatttaataaagataaagattgatgcttctgcatgtgtatttgattcatccaaaaa |
686056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 703719 - 703520
Alignment:
| Q |
1 |
catattgctttaattggctttgtgcatttaatgtacttcaaacttagtttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
703719 |
catattgctttaattggctttgtgcatttaatgtacttcaaacttaatttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattctta |
703620 |
T |
|
| Q |
101 |
gttaactgtaaaactgcttttaccagtttaatgacttgaattgaaatttaataaagataaagattgatgcttctgcatgtgtatttgattcatccaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
703619 |
gttaactgtaaaactgcttttaccagtttaatgacttgaattgaaatttaataaagataaagattgatgcttctgcatgtgtatttgattcatccaaaaa |
703520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 732497 - 732581
Alignment:
| Q |
217 |
catttagttaggcatttagttaggcatgaattgctatatatatgcattacattccaattagtatatcaaaacacaaggcctctct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
732497 |
catttagttaggcatttagttaggcatgaattgctatatatatgcattacattccaattaatatatcaaaacacaaggcctctct |
732581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 739688 - 739719
Alignment:
| Q |
199 |
aactaacatttagttaggcatttagttaggca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
739688 |
aactaacatttagttaggcatttagttaggca |
739719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 746099 - 746068
Alignment:
| Q |
199 |
aactaacatttagttaggcatttagttaggca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
746099 |
aactaacatttagttaggcatttagttaggca |
746068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University