View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4820_high_11 (Length: 311)
Name: NF4820_high_11
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4820_high_11 |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 30614235 - 30613926
Alignment:
| Q |
1 |
ttacatgtttctgtttcgcggtctctgttattcttgtatatggacnnnnnnn-aaagaatactgtgcagagatttggttattaataaattttttcgttaa |
99 |
Q |
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| T |
30614235 |
ttacatgtttctgtttcgctgtctctgttattcttgtatagggactttttttcaaagaatattgcgcagagatttggttattaataaacttttctgttaa |
30614136 |
T |
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| Q |
100 |
taaaacattaacaggtaggtgacgttcctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaatatgcaacatggtggcacaaatattt |
199 |
Q |
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| T |
30614135 |
taaaatattaacaggtaggcgacgttcctcttcaggttcgtttttgtcggttatttgatttatcagaaaataaatatgcaacacggtggcgcaaatattt |
30614036 |
T |
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| Q |
200 |
aacttgcggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtctg |
299 |
Q |
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| T |
30614035 |
aacttggggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtagaatgtaggttgttattattatatg |
30613936 |
T |
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| Q |
300 |
tggtgctgca |
309 |
Q |
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| T |
30613935 |
tggtgttgca |
30613926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 25094807 - 25094760
Alignment:
| Q |
127 |
ctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaat |
174 |
Q |
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| T |
25094807 |
ctcttcaggtttgttttcgtcgcttatttattttatcagaaaataaat |
25094760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 17620369 - 17620287
Alignment:
| Q |
209 |
tgggacgaggggg-gaggcgtggaagtggag-agaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgtta |
289 |
Q |
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| T |
17620369 |
tgggacgagggggagaggcgtggaagtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgtaggttgtta |
17620287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 13897252 - 13897204
Alignment:
| Q |
62 |
tgtgcagagatttggttattaataaattttttcgttaataaaacattaa |
110 |
Q |
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| T |
13897252 |
tgtgcagatatttagttattaataaattttatcgttaaaaaaatattaa |
13897204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 1426 - 1517
Alignment:
| Q |
219 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtctgtggtgctgca |
309 |
Q |
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| T |
1426 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgca |
1517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 6366 - 6457
Alignment:
| Q |
219 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtctgtggtgctgca |
309 |
Q |
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| T |
6366 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgca |
6457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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