View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4820_high_1_N (Length: 601)

Name: NF4820_high_1_N
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4820_high_1_N
NF4820_high_1_N
[»] chr3 (40 HSPs)
chr3 (23-575)||(28508007-28508559)
chr3 (221-575)||(26126275-26126629)
chr3 (23-432)||(28478874-28479260)
chr3 (224-575)||(26176329-26176680)
chr3 (217-571)||(26231838-26232192)
chr3 (342-575)||(26109619-26109852)
chr3 (342-575)||(26203911-26204144)
chr3 (135-571)||(28136928-28137339)
chr3 (41-183)||(28061078-28061220)
chr3 (41-183)||(28071503-28071645)
chr3 (44-183)||(28164326-28164465)
chr3 (217-575)||(26138414-26138736)
chr3 (463-575)||(28479264-28479376)
chr3 (328-509)||(27356914-27357095)
chr3 (217-304)||(26203828-26203915)
chr3 (217-315)||(26109519-26109617)
chr3 (417-540)||(17743873-17743996)
chr3 (417-540)||(19045193-19045316)
chr3 (398-543)||(8538459-8538604)
chr3 (454-543)||(27920846-27920935)
chr3 (417-540)||(11421866-11421989)
chr3 (258-316)||(28152497-28152555)
chr3 (417-543)||(28187298-28187424)
chr3 (258-324)||(28680491-28680557)
chr3 (454-543)||(27954815-27954904)
chr3 (258-324)||(8538345-8538411)
chr3 (417-543)||(28057824-28057950)
chr3 (417-543)||(28068249-28068375)
chr3 (358-575)||(27458131-27458348)
chr3 (447-540)||(28152294-28152387)
chr3 (260-324)||(27921044-27921108)
chr3 (468-543)||(27430396-27430471)
chr3 (253-319)||(27357083-27357149)
chr3 (253-319)||(27458047-27458113)
chr3 (396-526)||(27777197-27777327)
chr3 (399-543)||(28038151-28038295)
chr3 (461-519)||(8549710-8549768)
chr3 (417-543)||(28163288-28163414)
chr3 (262-319)||(27777383-27777440)
chr3 (253-313)||(28163455-28163515)
[»] chr7 (1 HSPs)
chr7 (152-571)||(8692145-8692539)
[»] chr2 (6 HSPs)
chr2 (328-509)||(22400828-22401009)
chr2 (328-509)||(22966005-22966186)
chr2 (328-505)||(22792536-22792713)
chr2 (253-319)||(22400997-22401063)
chr2 (253-319)||(22792701-22792767)
chr2 (253-319)||(22966174-22966240)
[»] scaffold0257 (2 HSPs)
scaffold0257 (448-543)||(19739-19834)
scaffold0257 (253-313)||(19906-19966)


Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 23 - 575
Target Start/End: Original strand, 28508007 - 28508559
Alignment:
Q  23 tcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508007 tcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgtt 28508106  T
Q  123 acacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508107 acacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatag 28508206  T
Q  223 tctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctg 322  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508207 tctaatagccgataggggcatgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctg 28508306  T
Q  323 ttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgc 422  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28508307 ttcactaagaacttccatttgttcgcttaaaatgcctatcttcaatcgcaagacttcaacatccttggtaacctgttgcttggaatctaataaattttgc 28508406  T
Q  423 aaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtatta 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508407 aaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtatta 28508506  T
Q  523 actccacaaatttagagtggcacgaccccaatacttccaacatactatgggtt 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508507 actccacaaatttagagtggcacgaccccaatacttccaacatactatgggtt 28508559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 221 - 575
Target Start/End: Original strand, 26126275 - 26126629
Alignment:
Q  221 agtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacc 320  Q
    |||||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||     
T  26126275 agtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccaca 26126374  T
Q  321 tgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaatttt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||| ||||||||| ||||  || |    
T  26126375 tgttcactaagaacttccatttgttcacttaaaatgcctatcttcaagcgcaacacttcaacttctttggtaacatgttccttggaatccaatagtttct 26126474  T
Q  421 gcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtat 520  Q
      ||  ||||||| || ||||  || |||||| |||||| || ||| || |||||||||||||||||||||||||||||||| || || ||||||||||     
T  26126475 ttaatacatcttgagagacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaa 26126574  T
Q  521 taactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtt 575  Q
    ||||||| |||||| ||||||| | ||||||||||||||||||| ||| ||||||    
T  26126575 taactcctcaaattcagagtggaatgaccccaatacttccaacacactgtgggtt 26126629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 23 - 432
Target Start/End: Original strand, 28478874 - 28479260
Alignment:
Q  23 tcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgtt 122  Q
    |||||||||||||||||     ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  28478874 tcatcaatgtaacatat-----aacaatcaataatagttttaaatacacaaacatagtaagaatctttagttcactttggatgagaaacgacgaaacgtt 28478968  T
Q  123 acacccaagaaataaacaatatcgaagtacaaag-------gttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaa 215  Q
    | ||||||||||| |||||||| |||||||||||       |||||||||||||||||||||||||||       ||||||| ||||  ||||||| |||    
T  28478969 atacccaagaaatgaacaatattgaagtacaaaggttctcagttcccacaatgaaaagcataacaaag----tagcaatgatagaattaaattactagaa 28479064  T
Q  216 gatatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatctt 315  Q
     ||||| |||||||||||| |||||||| ||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28479065 aatataatctaatagccgaaaggggcacttaaaaccgcctcttgttgaatgatagtctccaaaacagcttcagaggatgtcaattgttgcttaagatctt 28479164  T
Q  316 ccacctgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataa 415  Q
    |||| |                     ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||    
T  28479165 ccacat---------------------gttgacttaaaatgcctatcttcaaacgcaacacttcaacatccttggtaacctgttgctttgaatccaataa 28479243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 224 - 575
Target Start/End: Original strand, 26176329 - 26176680
Alignment:
Q  224 ctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgt 323  Q
    ||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||| |||    
T  26176329 ctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccacatgt 26176428  T
Q  324 tcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgca 423  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||| ||||||||| ||||  || |  |    
T  26176429 tcactaagaacttccatttgttcacttaaaatgcctatcttcaagcgcaacacttcaacttctttggtaacatgttccttggaatccaatagtttcttta 26176528  T
Q  424 aggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaa 523  Q
    |  ||||||| || ||||  || |||||| |||||| || ||| || |||||||||||||||||||||||||||||||| || || |||||||||| |||    
T  26176529 atacatcttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataa 26176628  T
Q  524 ctccacaaatttagagtggcacgaccccaatacttccaacatactatgggtt 575  Q
    |||| |||||| ||||||| | || |||||||||||||||| ||| ||||||    
T  26176629 ctcctcaaattcagagtggaatgagcccaatacttccaacacactgtgggtt 26176680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 217 - 571
Target Start/End: Original strand, 26231838 - 26232192
Alignment:
Q  217 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 316  Q
    |||||||||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||    
T  26231838 atatagtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaatagcttgagaggatgtcaattgatgcttaagaacttc 26231937  T
Q  317 cacctgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaa 416  Q
    ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || || ||||| || || |||||||| |||| ||||||||| ||||      
T  26231938 cacatgttcactaagaacttccatttgttcactcaaaatgcgtatcttcaagcgtaaaacttcaacttctttggtaacatgttccttggaatccaatagt 26232037  T
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    || |  ||  ||||||| ||  |||  || |||||| |||||| |||||| || |||||||||||||||||||||||||||||||| || || |||||||    
T  26232038 ttctttaatacatcttgagattcttgcatatcaggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatctt 26232137  T
Q  517 gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatg 571  Q
    ||| ||||||| |||||| ||||||| | || |||||||||||||||| ||||||    
T  26232138 gtaataactcctcaaattcagagtggaatgagcccaatacttccaacacactatg 26232192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 342 - 575
Target Start/End: Original strand, 26109619 - 26109852
Alignment:
Q  342 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacactt 441  Q
    |||| ||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||    
T  26109619 tgttgacttaaaatgcctatcttcaaacgcaacgcttcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatcttgtgatactt 26109718  T
Q  442 ttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtg 541  Q
     ||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||    
T  26109719 gtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccataaattcagagtg 26109818  T
Q  542 gcacgaccccaatacttccaacatactatgggtt 575  Q
    | | || || ||| ||||||| ||| ||||||||    
T  26109819 gtatgatcctaattcttccaatatattatgggtt 26109852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 342 - 575
Target Start/End: Original strand, 26203911 - 26204144
Alignment:
Q  342 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacactt 441  Q
    |||| ||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||    
T  26203911 tgttgacttaaaatgcctatcttcaaacgcaacgcttcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatcttgtgatactt 26204010  T
Q  442 ttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtg 541  Q
     ||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||    
T  26204011 gtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccagaaattcagagtg 26204110  T
Q  542 gcacgaccccaatacttccaacatactatgggtt 575  Q
    | | || || ||||||||||| | | ||||||||    
T  26204111 gaatgagcctaatacttccaatacattatgggtt 26204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 135 - 571
Target Start/End: Complemental strand, 28137339 - 28136928
Alignment:
Q  135 taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga 234  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||    |  |||||||| |||| || |||||||| ||||||||||||| || |    
T  28137339 taaaaaatattgaagaacaaaggttcccacaatgaaaagcataacaaag----cagcaatgatgaaataaaagtacttgaaaatatagtctaataaccaa 28137244  T
Q  235 taggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaac 334  Q
    |||| |||| ||||||  ||||||||||||| ||| ||| ||||||||||| ||||||||||||||| |||||||||||                         
T  28137243 taggtgcacttaaaaccgcctcttgttgaattatattcttcaaaacagctttagaggatgtcaattgatgcttaagatc--------------------- 28137165  T
Q  335 ttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgg 434  Q
    |||||  |||| |||||||||  ||||||| ||  |||| ||||| || ||||||||||  |||||||||||||| ||||| ||||||| ||| |||||     
T  28137164 ttccacatgttgacttaaaatctctatctttaaatgcaacacttcaacttccttggtaatttgttgcttggaatccaataatttttgcatggcgtcttga 28137065  T
Q  435 gacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatt 534  Q
    || | || ||| |||||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| ||||||||||| ||| ||  ||||||||||    
T  28137064 gatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagatccacaaatt 28136965  T
Q  535 tagagtggcacgaccccaatacttccaacatactatg 571  Q
     ||||||||| || || ||||| ||||| | ||||||    
T  28136964 cagagtggcatgagcctaatacatccaagacactatg 28136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 28061220 - 28061078
Alignment:
Q  41 atacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaataaaca 140  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  28061220 atacaacaatcactaatagttttaaatacacaaacataatgagactctttagttcacttcggatgagaaacgacgaaacgttacaccgaagaaatgaaca 28061121  T
Q  141 atatcgaagtacaaaggttcccacaatgaaaagcataacaaag 183  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  28061120 atattgaagtacaaaggttcccacaatggaaagcataacaaag 28061078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 28071645 - 28071503
Alignment:
Q  41 atacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaataaaca 140  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  28071645 atacaacaatcactaatagttttaaatacacaaacataatgagactctttagttcacttcggatgagaaacgacgaaacgttacaccgaagaaatgaaca 28071546  T
Q  141 atatcgaagtacaaaggttcccacaatgaaaagcataacaaag 183  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  28071545 atattgaagtacaaaggttcccacaatggaaagcataacaaag 28071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 28164465 - 28164326
Alignment:
Q  44 caacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaataaacaata 143  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28164465 caacaatcactaatagttttaaatacacaaacataatgagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaatgaacaata 28164366  T
Q  144 tcgaagtacaaaggttcccacaatgaaaagcataacaaag 183  Q
    | |||||||||| |||||||||||| ||||||||||||||    
T  28164365 ttgaagtacaaatgttcccacaatggaaagcataacaaag 28164326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 575
Target Start/End: Original strand, 26138414 - 26138736
Alignment:
Q  217 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 316  Q
    |||||||||||||||| ||||||||||  ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||       
T  26138414 atatagtctaatagccaataggggcactcaaaaccacctcttgttgaatgatacgctccaaaacaacttcagaggatgtcaactgttgcttaagatc--- 26138510  T
Q  317 cacctgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaa 416  Q
                      |||||  |||| |||||||||||||||||||||  |||| | ||| |||||||||||||||||||||||| |||| |||||     
T  26138511 ------------------ttccacatgttgacttaaaatgcctatcttcaagtgcaacaattcaacatccttggtaacctgttgcttgtaatccaataat 26138592  T
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    || |||       |||        |  || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||    
T  26138593 ttctgc-------ctt--------tcaatatcaggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatctt 26138677  T
Q  517 gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtt 575  Q
    ||| |||||||||||||| ||||||| | |  |||||||||||||| ||||||||||||    
T  26138678 gtaataactccacaaattcagagtggaatgtgcccaatacttccaatatactatgggtt 26138736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 463 - 575
Target Start/End: Original strand, 28479264 - 28479376
Alignment:
Q  463 gcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaa 562  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  28479264 gcctctccacaccatccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaa 28479363  T
Q  563 catactatgggtt 575  Q
    || ||||||||||    
T  28479364 cacactatgggtt 28479376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 27357095 - 27356914
Alignment:
Q  328 taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc 427  Q
    ||||| ||||||  |||| |||||||||| |||| ||||| ||||| ||||| || || ||||  || |||||||||||||| || |  |||||||| ||    
T  27357095 taagatcttccacatgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgc 27356996  T
Q  428 atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc 509  Q
    |||||| || |||||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||    
T  27356995 atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc 27356914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 26203828 - 26203915
Alignment:
Q  217 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttg 304  Q
    |||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26203828 atatagtctaatagccaataggggaactgaaaaccacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaactgttg 26203915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 26109519 - 26109617
Alignment:
Q  217 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatctt 315  Q
    ||||| |||||||||| |||||||| | |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  26109519 atataatctaatagccaataggggcccttaaaaccacctcttgttgaatgatactctccaagaaagcttcagaggatgtcaattgttgattaagttctt 26109617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 17743873 - 17743996
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   ||||||||||||||||| | ||||||||||||||||| | ||||||||||  ||| |||||| ||||||    
T  17743873 ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatctt 17743972  T
Q  517 gtattaactccacaaatttagagt 540  Q
    ||| |||||| ||||||| |||||    
T  17743973 gtaataactcgacaaattcagagt 17743996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 19045193 - 19045316
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   ||||||||||||||||| | ||||||||||||||||| | ||||||||||  ||| |||||| ||||||    
T  19045193 ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatctt 19045292  T
Q  517 gtattaactccacaaatttagagt 540  Q
    ||| |||||| ||||||| |||||    
T  19045293 gtaataactcgacaaattcagagt 19045316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 543
Target Start/End: Original strand, 8538459 - 8538604
Alignment:
Q  398 ttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaa 497  Q
    ||||| |||||| ||||  |||||||| |||| ||| || | || ||  |||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  8538459 ttgctgggaatccaatatcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaa 8538558  T
Q  498 ccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 543  Q
    ||| |  | ||| ||||||||| |||||| ||||||| ||| ||||    
T  8538559 ccacattttcgcacatcttgtaataactcaacaaattcagattggc 8538604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 454 - 543
Target Start/End: Complemental strand, 27920935 - 27920846
Alignment:
Q  454 acaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 543  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||| | |||||| ||||||||| ||| || ||||||| ||||||||    
T  27920935 acaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaataaatcaacaaattcagagtggc 27920846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 417 - 540
Target Start/End: Complemental strand, 11421989 - 11421866
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   ||||||||||||||||| | ||||||||||||||||| || || ||||||  ||| || ||| ||||||    
T  11421989 ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccattctttgtcaaaaggaaatctacgcacatctt 11421890  T
Q  517 gtattaactccacaaatttagagt 540  Q
    |||||||||| |||||| ||||||    
T  11421889 gtattaactcaacaaatgtagagt 11421866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 28152555 - 28152497
Alignment:
Q  258 tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 316  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  28152555 tgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagatcttc 28152497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 28187424 - 28187298
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   |||| |||||||||||  | |||| | |||||||||| |||||||||||||||||  ||||| ||||||    
T  28187424 ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt 28187325  T
Q  517 gtattaactccacaaatttagagtggc 543  Q
    ||| |||||| ||||||| ||||||||    
T  28187324 gtaataactcaacaaattcagagtggc 28187298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 28680491 - 28680557
Alignment:
Q  258 tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 324  Q
    |||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| ||||    
T  28680491 tgttgaatgatagtctccaaaacagcttcagaagatgtcaaatgatgcttaagatcttccacatgtt 28680557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 543
Target Start/End: Complemental strand, 27954904 - 27954815
Alignment:
Q  454 acaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 543  Q
    |||||||| || | |||||||||||||||||||| |||||||||||| | |||||| ||||||||| ||| || ||||||| ||||||||    
T  27954904 acaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaataaatcaacaaattcagagtggc 27954815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 8538345 - 8538411
Alignment:
Q  258 tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 324  Q
    |||||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||| ||||    
T  8538345 tgttgaatgatagtctccaaaatagcttcagaaactgtcaattgttgcttaagatcttccacatgtt 8538411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 28057950 - 28057824
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   |||| |||||| ||||  | |||| | |||||||||| |||||||||||||||||  ||||| ||||||    
T  28057950 ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt 28057851  T
Q  517 gtattaactccacaaatttagagtggc 543  Q
    ||| |||||| ||||||| ||||||||    
T  28057850 gtaataactcaacaaattcagagtggc 28057824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 28068375 - 28068249
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   |||| |||||| ||||  | |||| | |||||||||| |||||||||||||||||  ||||| ||||||    
T  28068375 ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt 28068276  T
Q  517 gtattaactccacaaatttagagtggc 543  Q
    ||| |||||| ||||||| ||||||||    
T  28068275 gtaataactcaacaaattcagagtggc 28068249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 575
Target Start/End: Original strand, 27458131 - 27458348
Alignment:
Q  358 ctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaa 457  Q
    ||||||| || ||||| ||||| || |||||||  || |||||||||||||| || |  ||||| ||  ||| ||| || |||| ||| || | ||||||    
T  27458131 ctatcttaaaacgcaacacttcaacttccttggagacttgttgcttggaatccaacagtttttgaaattcattttgagagacttgtatatccgaaaacaa 27458230  T
Q  458 agcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatact 557  Q
     || || || || | || |||||||||| ||||||||||| ||||||||||  ||||||||| |||||  |||||||||||| |||  || ||||| ||     
T  27458231 tgcacgtctttcgagactatccaaccaagccttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacccaacaca 27458330  T
Q  558 tccaacatactatgggtt 575  Q
    || |||| ||||||||||    
T  27458331 tcaaacacactatgggtt 27458348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 540
Target Start/End: Complemental strand, 28152387 - 28152294
Alignment:
Q  447 tcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagt 540  Q
    |||||||||||||||||| | |||||| |||||||||| |||||||||||   ||| || ||| ||||||||| |||||| ||||||| |||||    
T  28152387 tcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatcttgtaataactcaacaaattcagagt 28152294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 27921108 - 27921044
Alignment:
Q  260 ttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 324  Q
    |||||||||| |||||||||||  |||||| ||||||||||| ||||||||||||||||| ||||    
T  27921108 ttgaatgatagtctccaaaacatattcagaagatgtcaattgatgcttaagatcttccacatgtt 27921044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 27430396 - 27430471
Alignment:
Q  468 tcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 543  Q
    ||||||||||||||||| ||||||||||||  ||| || ||| ||||||||| |||||| ||||||| ||||||||    
T  27430396 tcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggc 27430471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 27357149 - 27357083
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 319  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  27357149 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac 27357083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 27458047 - 27458113
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 319  Q
    |||||| |||||| ||||||| ||||||||  || |||||||||||||| |||||||||||||||||    
T  27458047 cctctttttgaataatactcttcaaaacagtctccgaggatgtcaattgatgcttaagatcttccac 27458113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 27777327 - 27777197
Alignment:
Q  396 tgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaa 495  Q
    ||||||| |||||| ||||  ||||| || ||| |||| || | || ||| |||| ||||||||| ||  | |||||||||||||||||||| |||||||    
T  27777327 tgttgctgggaatccaatagtttttgtaatgcaacttgagagaattgtatatcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaa 27777228  T
Q  496 aaccaaagctgcgcgcatcttgtattaactc 526  Q
    ||||| | |||||  ||||||||| ||||||    
T  27777227 aaccacatctgcgtacatcttgtaataactc 27777197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 543
Target Start/End: Complemental strand, 28038295 - 28038151
Alignment:
Q  399 tgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaac 498  Q
    |||| |||||| ||||  |||||||| |||| ||| || | |||||  |||||||||||||| ||| | || |||||||| |||||||| ||||| ||||    
T  28038295 tgctgggaatccaatagcttttgcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaac 28038196  T
Q  499 caaagctgcgcgcatcttgtattaactccacaaatttagagtggc 543  Q
     | | |||||| |||||||||  ||||| ||||||| || |||||    
T  28038195 tacatctgcgcacatcttgtaacaactcaacaaattcagtgtggc 28038151  T

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Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 519
Target Start/End: Complemental strand, 8549768 - 8549710
Alignment:
Q  461 gcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgta 519  Q
    |||| ||||||||| ||||||||||||||||||||||||| |  ||||| |||||||||    
T  8549768 gcgcatctcaacacgatccaaccaatccttatcaaaaccacatttgcgcacatcttgta 8549710  T

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Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 28163414 - 28163288
Alignment:
Q  417 ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt 516  Q
    |||||||| |||||||| || |||| ||   |||| |||||||||||| | || | | |||||||||| ||||||| |||   ||| ||||| |||||||    
T  28163414 ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgatatcatccaaccattccttatgaaatggaaatctgcgtgcatctt 28163315  T
Q  517 gtattaactccacaaatttagagtggc 543  Q
    ||| |||||| ||||||| ||||||||    
T  28163314 gtagtaactcaacaaattcagagtggc 28163288  T

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Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 27777440 - 27777383
Alignment:
Q  262 gaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 319  Q
    |||||| | |||||||| ||||||| || ||||| ||||| |||||||||||||||||    
T  27777440 gaatgagagtctccaaatcagcttctgaagatgttaattgatgcttaagatcttccac 27777383  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 28163515 - 28163455
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatc 313  Q
    |||| |||||| ||||  ||| |||||||||||||||||| | |||||| |||||||||||    
T  28163515 cctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatgcttaagatc 28163455  T

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Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 152 - 571
Target Start/End: Original strand, 8692145 - 8692539
Alignment:
Q  152 caaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccgataggggcacgtaaaact 251  Q
    |||||||||||||||||||||| |||||||||   |    || |||| |||| || |||  ||| |||||||||||||||| ||| |||||| |||||||    
T  8692145 caaaggttcccacaatgaaaagtataacaaagtagc----aaagatgaaatagaagtacaagaaaatatagtctaatagccaataagggcacttaaaact 8692240  T
Q  252 acctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaacttccatttgttcactta 351  Q
     ||||||||||||| ||| ||| |||||||||||  ||| |||||||||| ||||||||||| ||||| |||                     | |||||    
T  8692241 gcctcttgttgaattatattcttcaaaacagctttggagcatgtcaattgatgcttaagatcctccacatgt---------------------tgactta 8692319  T
Q  352 aaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcagg 451  Q
    ||||  ||||||||||  |||| ||||| || |||||||||||||||||||||||||| |||||  |||||| ||| ||||| || | || ||| |||||    
T  8692320 aaatctctatcttcaaatgcaacacttcaacttccttggtaacctgttgcttggaatccaataatgtttgcatggcgtcttgcgatatttgtatatcagg 8692419  T
Q  452 aaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgacccc 551  Q
    ||||| ||| || || || |||| |||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||| ||||||||| || ||     
T  8692420 aaacatagcccgtctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagctccacaaattcagagtggcatgaacct 8692519  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 22401009 - 22400828
Alignment:
Q  328 taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc 427  Q
    ||||| ||||||  |||| |||||||||| |||| ||||| ||||| ||||| || || ||||  || |||||||||||||| || |  |||||||| ||    
T  22401009 taagatcttccacatgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgc 22400910  T
Q  428 atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc 509  Q
    |||||| || |||||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||    
T  22400909 atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc 22400828  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 22966186 - 22966005
Alignment:
Q  328 taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc 427  Q
    ||||| ||||||  |||| |||||||||| |||| ||||| | ||| ||||| || || ||||  || |||||||||||||| || |  |||||||| ||    
T  22966186 taagatcttccacatgttgacttaaaatgtctattttcaaacccaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgc 22966087  T
Q  428 atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc 509  Q
    |||||| || |||||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||    
T  22966086 atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc 22966005  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 328 - 505
Target Start/End: Complemental strand, 22792713 - 22792536
Alignment:
Q  328 taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc 427  Q
    ||||| ||||||  |||| |||||||||| |||| ||||| | ||| ||||| || || ||||  || ||||| |||||||| || |  |||||||| ||    
T  22792713 taagatcttccacatgttgacttaaaatgtctattttcaaacacaacacttcaacttctttggagacttgttgattggaatccaacagtttttgcaatgc 22792614  T
Q  428 atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagct 505  Q
    |||||| || |||||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||    
T  22792613 atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagct 22792536  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 22401063 - 22400997
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 319  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  22401063 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac 22400997  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 22792767 - 22792701
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 319  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  22792767 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac 22792701  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 22966240 - 22966174
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 319  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  22966240 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac 22966174  T

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Target: scaffold0257 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 448 - 543
Target Start/End: Complemental strand, 19834 - 19739
Alignment:
Q  448 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 543  Q
    ||||||||||||||||| | || ||| |||||||||| | ||||||||||||| |  ||||| ||||||||| |||||| ||||||| ||||||||    
T  19834 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtagtaactcaacaaattcagagtggc 19739  T

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Target: scaffold0257; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 19966 - 19906
Alignment:
Q  253 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatc 313  Q
    ||||||||||| |||| |||| |||||||||||||||||| | |||||| |||||||||||    
T  19966 cctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatgcttaagatc 19906  T

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