View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4820_high_3 (Length: 395)
Name: NF4820_high_3
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4820_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 36929549 - 36929358
Alignment:
| Q |
28 |
aaaattatttccattcaacaacttcaatgaggtttgtaaacgttgttctgtgaagcctcatttgcttccaattgactctaatatttttcttatataattg |
127 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36929549 |
aaaattatttccattcaacaatttcaatgaggtttgtaaacgttgttctgtgaagcctcatttgctaccaattgactctaatatttttcttatataattg |
36929450 |
T |
|
| Q |
128 |
ccttgcagaaatgtcgatctacaatacgcgtcggcgtgcataaagctttgcagggtaaatttgttttgtcattgcattctattacaacactg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36929449 |
ccttgcagaaatgtcgatctacaatacgcgtcggcgtgcataaagctttgcagggtaaatttgttttgccattgcattctattacaacactg |
36929358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 28466494 - 28466584
Alignment:
| Q |
276 |
cagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggat |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28466494 |
cagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggat |
28466584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 28474915 - 28475005
Alignment:
| Q |
276 |
cagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggat |
366 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28474915 |
cagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggat |
28475005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University