View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4820_high_7 (Length: 330)
Name: NF4820_high_7
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4820_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 42824611 - 42824934
Alignment:
| Q |
7 |
gcatcacagatccaccacaaacctcttctccgacccactcgactcccatcctctctggctcaaacctacctccttcctctcccctgacttcgattccgaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824611 |
gcatcacagatccaccacaaacctcttctccgacccactcgactcccatcctctctggttcaaacctacctccttcctctcccctgacttcgattccgaa |
42824710 |
T |
|
| Q |
107 |
tcctacatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgtcgctaaatcacgagctcattgatctaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824711 |
tcctacatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgtcgctaaatcacgagctcattgatctaa |
42824810 |
T |
|
| Q |
207 |
tcaatcgcgattatgctgatttcgttaatttgagtacgaagcttgttgatgtggatgcggcggtggtgcggatgcgggcgccgcttgttgagttgaggga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824811 |
tcaatcgcgattatgctgatttcgttaatttgagtacgaagcttgttgatgtggatgcggcggtggtgcggatgcgggcgccgcttgttgagttgaggga |
42824910 |
T |
|
| Q |
307 |
gaagattgaacagtttagaggttc |
330 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42824911 |
gaagattgaacagtttagaggttc |
42824934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 48411741 - 48411586
Alignment:
| Q |
80 |
ttcctctcccctgacttcgattccgaatcctacatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgt |
179 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| || |||| | ||||||||| || ||| |||||||||| || ||||||||||||| || || | |
|
|
| T |
48411741 |
ttcctctcccctaacttcgattccgaatcatacatctctcaacttccaaccttcgttcccttccacactctccgttcacaactcaacaactacctttcat |
48411642 |
T |
|
| Q |
180 |
cgctaaatcacgagctcattgatctaatcaatcgcgattatgctgatttcgttaat |
235 |
Q |
| |
|
| ||||||||| | |||||| |||| |||||||||||||| ||||||||| |||| |
|
|
| T |
48411641 |
ccctaaatcaccaactcattcatcttatcaatcgcgattactctgatttcgctaat |
48411586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University