View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4820_high_8 (Length: 326)

Name: NF4820_high_8
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4820_high_8
NF4820_high_8
[»] chr1 (1 HSPs)
chr1 (9-326)||(45710834-45711151)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 45710834 - 45711151
Alignment:
Q  9 agcagagatcatatttaaaacagtaagtaattttaatgtgtatcaatagtaaattaatatttactcaaatatgtcacttgatcaaattttgaaagannnn 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  45710834 agcaaagatcatatttaaaacagtaagtaattttaatgtgtatcaatagtaaattaatatttactcaaatatgtcacttgatcaaattttgaaagatttt 45710933  T
Q  109 nnnatggttagaaaatgttgttgttaaaacaggttagtggtgggtaaatcatgtctggtcnnnnnnnnntattgggttggagccgtcgaactattcatac 208  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | |||||||||||||||||||||||||||||    
T  45710934 tttatggttagaaaatgttgttgttaaaacaggttagtggtgggtaaatcatgtctggtcaaaaaaaaatcttgggttggagccgtcgaactattcatac 45711033  T
Q  209 aaatcatcttgcataatacgctcttttattatatttcacttaaacatgagttaactaagttcaacttgacttggacaagctaatgtatatgtttcttaac 308  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45711034 aaatcatcttgcataatacgttcttttattatatttcacttaaacatgagttaactaagttcaacttgacttggacaagctaatgtatatgtttcttaac 45711133  T
Q  309 agttaacacccttaatcc 326  Q
    ||||||||||||||||||    
T  45711134 agttaacacccttaatcc 45711151  T

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