View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4820_high_9 (Length: 325)

Name: NF4820_high_9
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4820_high_9
NF4820_high_9
[»] chr5 (19 HSPs)
chr5 (123-319)||(29860905-29861101)
chr5 (123-319)||(33134124-33134320)
chr5 (131-309)||(33007931-33008109)
chr5 (123-309)||(15922112-15922299)
chr5 (165-309)||(7883745-7883889)
chr5 (165-319)||(5868242-5868395)
chr5 (128-319)||(25346985-25347187)
chr5 (123-307)||(31077897-31078078)
chr5 (3-46)||(29861178-29861221)
chr5 (123-183)||(21091191-21091252)
chr5 (185-292)||(21092372-21092479)
chr5 (219-312)||(39351321-39351414)
chr5 (256-309)||(42683974-42684027)
chr5 (3-44)||(25346860-25346901)
chr5 (6-46)||(21091074-21091114)
chr5 (4-44)||(39351582-39351622)
chr5 (3-46)||(31078179-31078222)
chr5 (3-41)||(33134402-33134440)
chr5 (5-46)||(33007807-33007848)
[»] chr8 (21 HSPs)
chr8 (123-312)||(16295382-16295570)
chr8 (123-312)||(16303084-16303272)
chr8 (123-310)||(37246211-37246397)
chr8 (123-319)||(40953266-40953463)
chr8 (123-312)||(43596876-43597066)
chr8 (123-302)||(11656274-11656454)
chr8 (123-309)||(27696279-27696463)
chr8 (123-309)||(15268673-15268860)
chr8 (191-309)||(32962103-32962221)
chr8 (165-300)||(35010673-35010807)
chr8 (3-47)||(16295646-16295690)
chr8 (3-47)||(16303348-16303392)
chr8 (165-319)||(16456533-16456687)
chr8 (3-47)||(27696540-27696584)
chr8 (3-46)||(40953540-40953583)
chr8 (5-47)||(37246470-37246512)
chr8 (3-46)||(3174228-3174271)
chr8 (3-46)||(11656156-11656199)
chr8 (3-46)||(15268937-15268980)
chr8 (3-44)||(511950-511991)
chr8 (3-44)||(43597145-43597186)
[»] chr6 (14 HSPs)
chr6 (123-319)||(23404524-23404720)
chr6 (123-309)||(9314855-9315041)
chr6 (125-319)||(29979329-29979521)
chr6 (123-301)||(10789350-10789529)
chr6 (129-319)||(12255148-12255339)
chr6 (123-309)||(32329397-32329574)
chr6 (165-234)||(391239-391308)
chr6 (146-318)||(24660744-24660917)
chr6 (3-44)||(391093-391134)
chr6 (3-46)||(12255423-12255466)
chr6 (3-46)||(23404797-23404840)
chr6 (3-47)||(10789231-10789275)
chr6 (3-46)||(9315118-9315161)
chr6 (3-44)||(32329652-32329693)
[»] chr4 (19 HSPs)
chr4 (123-319)||(37910591-37910787)
chr4 (128-309)||(34513686-34513868)
chr4 (123-309)||(45499102-45499291)
chr4 (123-304)||(5787228-5787410)
chr4 (123-309)||(28115853-28116040)
chr4 (123-273)||(44290095-44290246)
chr4 (123-319)||(3767773-3767970)
chr4 (127-309)||(34940338-34940521)
chr4 (123-267)||(34513934-34514078)
chr4 (130-319)||(17702165-17702355)
chr4 (167-319)||(53923756-53923908)
chr4 (3-44)||(36198624-36198665)
chr4 (3-46)||(44289435-44289478)
chr4 (249-312)||(54103407-54103470)
chr4 (3-47)||(34940601-34940645)
chr4 (3-47)||(37910472-37910516)
chr4 (3-46)||(45498982-45499025)
chr4 (13-47)||(5787121-5787155)
chr4 (4-46)||(28115542-28115584)
[»] chr1 (10 HSPs)
chr1 (123-319)||(28622840-28623037)
chr1 (136-319)||(49549551-49549734)
chr1 (157-319)||(37346973-37347136)
chr1 (123-312)||(19910044-19910236)
chr1 (165-303)||(10306761-10306901)
chr1 (3-46)||(37346166-37346209)
chr1 (6-47)||(52268248-52268289)
chr1 (3-46)||(19910323-19910366)
chr1 (243-310)||(35508883-35508950)
chr1 (3-46)||(10306616-10306660)
[»] chr7 (14 HSPs)
chr7 (123-319)||(18503004-18503203)
chr7 (123-319)||(15672890-15673077)
chr7 (123-304)||(34703087-34703272)
chr7 (123-198)||(34866371-34866447)
chr7 (146-319)||(28428979-28429154)
chr7 (242-309)||(6110188-6110255)
chr7 (165-312)||(34183115-34183262)
chr7 (165-312)||(34203704-34203851)
chr7 (3-46)||(34866251-34866294)
chr7 (146-211)||(17508667-17508733)
chr7 (146-211)||(17544481-17544547)
chr7 (165-207)||(6110260-6110302)
chr7 (163-300)||(3480695-3480832)
chr7 (238-319)||(25102676-25102757)
[»] chr2 (16 HSPs)
chr2 (123-319)||(40619623-40619820)
chr2 (123-304)||(13996080-13996262)
chr2 (123-319)||(41595278-41595475)
chr2 (124-309)||(13349429-13349615)
chr2 (123-286)||(19695756-19695918)
chr2 (123-309)||(27338768-27338944)
chr2 (209-319)||(37485638-37485746)
chr2 (5-46)||(40619505-40619546)
chr2 (3-46)||(37485884-37485927)
chr2 (146-285)||(15665348-15665492)
chr2 (3-46)||(19695995-19696038)
chr2 (3-45)||(27339023-27339065)
chr2 (179-301)||(34355853-34355975)
chr2 (123-172)||(37485758-37485807)
chr2 (3-46)||(13995547-13995590)
chr2 (3-46)||(41595551-41595594)
[»] chr3 (13 HSPs)
chr3 (123-304)||(40700954-40701135)
chr3 (123-319)||(28457711-28457903)
chr3 (165-309)||(21748365-21748509)
chr3 (190-304)||(33072676-33072790)
chr3 (165-303)||(45853076-45853214)
chr3 (155-303)||(21153349-21153498)
chr3 (222-312)||(7818444-7818533)
chr3 (166-208)||(33072806-33072848)
chr3 (155-272)||(46663287-46663405)
chr3 (3-47)||(54819666-54819711)
chr3 (3-46)||(40700834-40700877)
chr3 (165-202)||(21495228-21495265)
chr3 (3-44)||(41864798-41864839)
[»] scaffold0957 (1 HSPs)
scaffold0957 (130-319)||(1693-1885)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 123 - 319
Target Start/End: Complemental strand, 29861101 - 29860905
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29861101 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcccatcag 29861002  T
Q  223 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  29861001 gataatttctaacttagcctatactcaggatataaattacaaaggaaagtcatgatatgatagggaaatggtttattttatcctatctctttggtgc 29860905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 123 - 319
Target Start/End: Complemental strand, 33134320 - 33134124
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||  ||| |    
T  33134320 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatgacagaatatcaagataataaataaggaatgatcttctaattccat-a 33134222  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||    
T  33134221 ggataatttctaacctagcctatactcatgatagaaattacaaaggaaagtcaggataggataggaaaatggtttattttatcctatccctttggtgc 33134124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 33007931 - 33008109
Alignment:
Q  131 aatacatgctataactattttaaaaatgacaatatttaaa-aatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatt 229  Q
    ||||||| |||| | |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  33007931 aatacatcctatcattattttaaaaatgacaatattttaataatgacagaatatcaagataataaataaggaatgatcttctaatcccatcaggataatt 33008030  T
Q  230 tctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  33008031 tctaacccagcttatactcaggataaaaattacaaaggaaagtcaggatatgata-gaaaatgatttattttatcctatc 33008109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 15922112 - 15922299
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaat-ggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||  |||||||||||| |||||    
T  15922112 taatagaaaatacatgctatcattattttaaaaatgacaatatttaaaaaaaggcagaatatcaagataattaataaggattgatcttctaatcccatca 15922211  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    ||||||||||||||| | || |||||||  ||| ||||||||||||||||||| ||||||||||  ||||  ||||||||||| ||||    
T  15922212 ggataatttctaacccaaccgatactcaaaatagaaattacaaaggaaagtcatgatatgatagaaaaataatttattttatcatatc 15922299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 165 - 309
Target Start/End: Original strand, 7883745 - 7883889
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||||||    
T  7883745 tttaaaaatggcagaatataaagataataaataaggaatgatcttctaatcccatcaggataatttctaatccagcctatactcagaatagaaattacaa 7883844  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||||| |||| ||| |||||| ||||||||||||||||||||||    
T  7883845 aggaaattcagaataggataggaaaatggtttattttatcctatc 7883889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 165 - 319
Target Start/End: Original strand, 5868242 - 5868395
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||| | |||||||||| ||||||||| |||| ||||||| |||| |||||||||    
T  5868242 tttaaaaatggcagaatatcacgataataaataacgaatgatcttctaacc-catcaggatagtttctaacccagccaatactcaagatagaaattacaa 5868340  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||    
T  5868341 aggaaagtcgggataggataggaaaatggtttattttatcctatctctttggtgc 5868395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 25346985 - 25347187
Alignment:
Q  128 gaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggata 226  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||| |||||||  || ||| |||||||| | ||||||||    
T  25346985 gaaaatacatgctatcattattttaaaaatgacaatattttaaaaatggcataatatcaagatagtaaataaaaaatgatgttctaatcccgtcaggata 25347084  T
Q  227 atttctaac----------ctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtgg 316  Q
    |||||||||          ||||| |||||| | |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||    
T  25347085 atttctaacccatcttatactagcttatactaatgatagaaattacaaaggaaaatcaggatatgataggaaaatggtttattttatcctatccctttgg 25347184  T
Q  317 tgc 319  Q
    |||    
T  25347185 tgc 25347187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 307
Target Start/End: Complemental strand, 31078078 - 31077897
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaa-aatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    ||||||||||||||||||||   ||||||||| |||| ||||||| || ||||  | |||||||   |||||||||||||| |||||||||||| |||||    
T  31078078 taatagaaaatacatgctatcgttattttaaatatgaaaatattttaagaatgataaaatatca---taataaataaggaatgatcttctaatc-catca 31077983  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatccta 307  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||  ||| | |||| |||||||||||||||    
T  31077982 ggataatttctaactcagcttatactcaggatataaattacaaaggaaagtcatgatagaataagaaaatagtttattttatccta 31077897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 29861221 - 29861178
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29861221 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 29861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 21091191 - 21091252
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatat 183  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||    
T  21091191 taatagaaaatacatgctatcattattttaaaaatgacaatatttcaaaaatggtagaatat 21091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 21092372 - 21092479
Alignment:
Q  185 aagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgata 284  Q
    |||||||| |||||| || ||| |||||||| |||||||||||||| ||||  ||  |||| |||||||| |||||||| |||||||| ||||||  |||    
T  21092372 aagataatgaataagaaatgatattctaatctcatcaggataatttataactcagtttatattcaggatagaaattacataggaaagtgaggataatata 21092471  T
Q  285 gggaaatg 292  Q
    || |||||    
T  21092472 ggaaaatg 21092479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 39351414 - 39351321
Alignment:
Q  219 tcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    |||||||||||| ||||| | |||| |||||||||| || ||||||||  |||| || |||||||| | ||||| |||||||||| ||||||||    
T  39351414 tcaggataatttataacccaacctacactcaggataaaatttacaaagacaagttagtatatgatatgaaaatgatttattttattctatctct 39351321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 42683974 - 42684027
Alignment:
Q  256 aaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||    
T  42683974 aaattacaaaggaaagtcaggatatgatagaaaaatgatttattttatcttatc 42684027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 25346860 - 25346901
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  25346860 acattaatcctatcatgtgtttgatgcgcacatgataacaaa 25346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 21091074 - 21091114
Alignment:
Q  6 ttaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  21091074 ttaatcctatcatgtgtttgatgcgcacatgataacaaaca 21091114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 39351622 - 39351582
Alignment:
Q  4 cattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  39351622 cattaatcatatcatgtgtttgatgcgcacatgataacaaa 39351582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 31078222 - 31078179
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  31078222 acattaattctatcatgtgtttgatgcgcacatgataacaaaca 31078179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 33134440 - 33134402
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataac 41  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  33134440 acattaatcctatcatgtgtttgatgcgcacatgataac 33134402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 33007807 - 33007848
Alignment:
Q  5 attaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  33007807 attaatcatatcatgtgtttgatgcacacatgataacaaaca 33007848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 16295570 - 16295382
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||     
T  16295570 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggtagaatatcaagataataaataaggaatgatcttccaatcccatca- 16295472  T
Q  223 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16295471 gataatttctaacctagtctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctct 16295382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 16303272 - 16303084
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||     
T  16303272 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggtagaatatcaagataataaataaggaatgatcttccaatcccatca- 16303174  T
Q  223 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16303173 gataatttctaacctagtctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctct 16303084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 123 - 310
Target Start/End: Complemental strand, 37246397 - 37246211
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 222  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||    
T  37246397 taatagaaaatacatgttataactattttaaaaataacaatatttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcccctcag 37246298  T
Q  223 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatct 310  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  37246297 gataatttctaacctagcctatactcaagatataaattacaaaggaaagtcagaatatg-tagggaaatgggttattttatcctatct 37246211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 123 - 319
Target Start/End: Complemental strand, 40953463 - 40953266
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |    
T  40953463 taataaaaaatacatgctatcattattttaaaaatgacaatattttaaaaagggcagaatatcaaggtaataaataaggaatgatcttctaatcccatta 40953364  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||| ||| ||||||| ||||||    
T  40953363 taataatttctaacccagcctatactcaggataaaaattacaaaggaaagtcaggatatgatagaaaaatgatttatttcatcatatctctttggtgc 40953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 43597066 - 43596876
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  43597066 taatagaaaatacatgctatgattatttttaaaatgacaatattttaaaaatggcagaatataaagattataaataaggagtgatcttctaatctcatca 43596967  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    ||||||||| ||||  |  ||||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||||||    
T  43596966 ggataatttttaactcaatctatactcaggatataaattacaaaggaaagtcgggatatgatagaaaaatgatttattttatcctatctct 43596876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 123 - 302
Target Start/End: Original strand, 11656274 - 11656454
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||  ||||||| ||||||| |||| ||||||||||||| |||||||||||| ||| |    
T  11656274 taatagaaattacatgctatcattattttaaaaatgacaatattttcaaaatggtagaatattaagacaataaataaggaatgatcttctaatctcatta 11656373  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttatttta 302  Q
    ||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||| |||||  |||||||||||||||    
T  11656374 ggataatttctaacccaacctatattcaggatagaaattacaaaggaaagtcaggataggatagaaaaatggtttatttta 11656454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 123 - 309
Target Start/End: Complemental strand, 27696463 - 27696279
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||    
T  27696463 taatagaaaatacatgctatcattattttaaaaataacaatattttaaaaatgacagaatatcaagataataaataaggaatgatctcctaatcccatca 27696364  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
     |||||||||||||||||| ||||| |||||||||||||||||||   | ||| |||| |||||| |||| |||||||||||| ||||    
T  27696363 agataatttctaacctagcttatacacaggatataaattacaaag---aatcaagataagataggaaaatagtttattttatcatatc 27696279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 123 - 309
Target Start/End: Complemental strand, 15268860 - 15268673
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaa-tgacaatatttaa-aaatggcagaatatcaagataataaataaggaaagatcttctaatcacatc 220  Q
    |||||||||||||||||||| | ||||||||| | ||||| ||||| | |||||| |||||||||||||||||||||||||| |||||| ||||| |||     
T  15268860 taatagaaaatacatgctatcattattttaaacactgacagtattttataaatggtagaatatcaagataataaataaggaacgatcttttaatc-catt 15268762  T
Q  221 aggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||||||||||||||| ||| |||||| || ||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  15268761 aggataatttctaacccagcatatacttagaataaaaattacaaaggaaagtcgggataggataggaaaatggtttattttatcctatc 15268673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 32962221 - 32962103
Alignment:
Q  191 ataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaa 290  Q
    |||||| ||||| |||||||||||| |||||||||||||| ||||  ||| | ||||||||||| ||||||||||||||||||||||||||||||| |||    
T  32962221 ataaatgaggaatgatcttctaatctcatcaggataatttataactcagcttgtactcaggatagaaattacaaaggaaagtcaggatatgataggaaaa 32962122  T
Q  291 tggtttattttatcctatc 309  Q
    | ||||||||||| |||||    
T  32962121 tagtttattttattctatc 32962103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 35010673 - 35010807
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    |||||||||||   |||| ||||||||||||||||||| |||||| ||||| |||| ||||| |||||||  ||||| ||||||||| |||||||||||     
T  35010673 tttaaaaatggtgaaatagcaagataataaataaggaatgatcttttaatctcatcgggatagtttctaatttagccaatactcagg-tataaattacag 35010771  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattt 300  Q
    | |||||| | |||| |||||| |||||||||||||    
T  35010772 acgaaagtaatgataagataggaaaatggtttattt 35010807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 16295690 - 16295646
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16295690 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 16295646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 16303392 - 16303348
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16303392 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 16303348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 319
Target Start/End: Complemental strand, 16456687 - 16456533
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaa-agatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattaca 263  Q
    |||||||||| |||||| ||| ||| ||||||||| || | || || |||||  |||| ||||||||||||| |||| |||||||| ||||  |||||||    
T  16456687 tttaaaaatgacagaatgtcatgatcataaataagaaatatatttt-taatcctatcaagataatttctaacgtagcttatactcaagataagaattaca 16456589  T
Q  264 aaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    || | || |||||||| ||||   |||| |||||||||||| ||||||| ||||||    
T  16456588 aaagcaaatcaggataggataaaaaaatagtttattttatcttatctctttggtgc 16456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 27696584 - 27696540
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||    
T  27696584 acattaatcctatcatgtgtttaatgtgcacatgataacaaacag 27696540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 40953583 - 40953540
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  40953583 acattaatcatatcatgtgtttgatgcgcacatgataacaaaca 40953540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 37246512 - 37246470
Alignment:
Q  5 attaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  37246512 attaatcttatcatgtgtttgatttgcacatgaaaacaaacag 37246470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 3174271 - 3174228
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  3174271 acattaatcctatcatgtgtttgatgcgtacatgataacaaaca 3174228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 11656156 - 11656199
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  11656156 acattaatcatatcatgtgtttgatgcgtacatgataacaaaca 11656199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 15268980 - 15268937
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||    
T  15268980 acattaatcctatcatatgtttggtgtgcacatgataacaaaca 15268937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 511991 - 511950
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  511991 acattaatcttatcatgtgtttgattcgcacatgataccaaa 511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 43597186 - 43597145
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    ||||||||| |||||| ||||||||| |||||||||||||||    
T  43597186 acattaatcctatcatatgtttgatgggcacatgataacaaa 43597145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 319
Target Start/End: Complemental strand, 23404720 - 23404524
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaa-tcacatca 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||| ||| ||||    
T  23404720 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaattaggaataatcttttaagtca-atca 23404622  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  23404621 ggataatttctaacttagcctatactcaagatataaattacaaaggaaagtcaggatatgatatggaaatggtttattttatcctatctctttggtgc 23404524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 123 - 309
Target Start/End: Complemental strand, 9315041 - 9314855
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||    
T  9315041 taatagaaaatacatgctatcattattttaaaaatgatgatattttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatctcacca 9314942  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||||||||||||   ||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  9314941 ggataatttctaattcagcctatactcaggattgaaattacaaaggaaagtcaggataggataggaaaatggttta-tttatcctatc 9314855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 29979329 - 29979521
Alignment:
Q  125 atagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcagg 223  Q
    |||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||   ||||     
T  29979329 atagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatggtagaatatcaagataataaataaggaatgatcttttaatc---tcaga 29979425  T
Q  224 ataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||| ||||  ||||||||||| ||||||||||||||| |||  |||||||||| ||||||||||||||||| |||| || ||||||    
T  29979426 ataatttctaacccagccggtactcaggatagaaattacaaaggaaaatcataatatgataggaaaatggtttattttatcatatccctttggtgc 29979521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 301
Target Start/End: Original strand, 10789350 - 10789529
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||| |||||    
T  10789350 taatagaaaatacatgctattattattttaaaaatgacaatattttaaaaatagcagaatatcaagataataaataaggaatgatattataatcccatca 10789449  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttatttt 301  Q
    | ||||||| ||||| | ||||||||| ||||| ||||||||||||||| ||||||||  ||| | ||||||||||||||    
T  10789450 gaataatttataacccaacctatactctggatagaaattacaaaggaaaatcaggataaaataagaaaatggtttatttt 10789529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 129 - 319
Target Start/End: Complemental strand, 12255339 - 12255148
Alignment:
Q  129 aaaatacatgctataactattttaaaaatgacaatatttaaaaatgg-cagaatatcaagataataaataaggaaagatcttctaatcacatcaggataa 227  Q
    |||||||||||||| | |||||||||| | ||||||||| |||| || |||||||||||||||||||||||||||  ||||||||||| ||||| |||||    
T  12255339 aaaatacatgctatcattattttaaaagtaacaatattttaaaaaggacagaatatcaagataataaataaggaattatcttctaatcccatcatgataa 12255240  T
Q  228 tttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||| ||||| |||||||||||||  || |||||||||||||||| ||| ||| |||||| |||||||||||||||||| ||| || ||||||    
T  12255239 tttttaacccagcctatactcagattagaaattacaaaggaaagacagaataggataggaaaatggtttattttatcccatccctttggtgc 12255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 123 - 309
Target Start/End: Complemental strand, 32329574 - 32329397
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| |  |||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||| ||||||||||            
T  32329574 taatagaaaatacatgctatcatcattttaaaaatgacaatattttcaaaatggtagaatatcaacataataaataaggaatgatcttctaa-------- 32329483  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
      ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  32329482 --ataatttctaacccagcatatattcaggatataaattacaaaggaaagtcaggataagatatgaaaatggtttattttatcatatc 32329397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 391239 - 391308
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaa 234  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||    
T  391239 tttaaaaatggcaaaatatcaagataataaataaggaatgatcttctaatcaaatcacaataatttctaa 391308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 318
Target Start/End: Original strand, 24660744 - 24660917
Alignment:
Q  146 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctat 244  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||||||| |  || ||||||||   |||||||| || |||||  ||| |||    
T  24660744 tattttaaaaatgacaacattttaaaaatgatagaatatcatgataataaataaggtat-attttctaatcctttcaggatagttcctaactcagcttat 24660842  T
Q  245 actcaggatataaattacaaagg-aaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtg 318  Q
    |||||||||| |||||||||||| |||  || ||||  ||||  |||||||||| |||||| ||||||| |||||    
T  24660843 actcaggatacaaattacaaaggaaaaaccaagatagtatagaaaaatggtttaatttatcatatctctttggtg 24660917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 391093 - 391134
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  391093 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 391134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 12255466 - 12255423
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  12255466 acattaatcttatcatgtgtttgatgcgcacatgataacaaaca 12255423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 23404840 - 23404797
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  23404840 acattaatattatcatgtgtttgatgtgcacatgataacaaaca 23404797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 10789231 - 10789275
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  10789231 acattaatcttatcatgtgtttgatgcgaacatgataacaaacag 10789275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 9315161 - 9315118
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  9315161 acattaatcctatcatgtgtttgatgcgcacatgataacaaaca 9315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 32329693 - 32329652
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  32329693 acattaatcatatcatgtgtttgatacgcacatgataacaaa 32329652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 37910591 - 37910787
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 222  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  37910591 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaatggcagaatatcaaaataataaataaggaatgatcttctaatcccatcag 37910690  T
Q  223 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    |||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||| || ||||||    
T  37910691 gataatttctaacccagcttatactcatgatataaattacaaacgaaagtcaggatatgataggaaaatgatttattttatcgtatccctttggtgc 37910787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 128 - 309
Target Start/End: Original strand, 34513686 - 34513868
Alignment:
Q  128 gaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggata 226  Q
    ||||||||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||    
T  34513686 gaaaatacatgttatcattattttaaaaatgacaatattttaaaaatggcagaatatcaagataataaataagaaatgattttctaatcccatcaggata 34513785  T
Q  227 atttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34513786 atttctaacccagcttatactcaggatagaaattacaaaggaaagtcaggatatgatagaaaaatggtttattttatcctatc 34513868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 45499102 - 45499291
Alignment:
Q  123 taatagaaaatacat--gctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacat 219  Q
    |||||||||||||||  ||||| | ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  45499102 taatagaaaatacatatgctatcattattttaaaaatgacaatattttcaaaatggcagaatatcaagataataaataaagaatgatcttctaatcccat 45499201  T
Q  220 caggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    || |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  45499202 catgatagtttctaacccagcctatattcaggatataaattacaaaggaaagtcaggataggatagagaaatggtttattttatcctatc 45499291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 304
Target Start/End: Original strand, 5787228 - 5787410
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  5787228 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatggcagaatatcaagataataaataaggaatgatcttttaatcccatca 5787327  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 304  Q
    ||||||||||||||  ||| |||||||   ||| ||||||||||||||| ||| |||| |||||| ||||| |||||||||||    
T  5787328 ggataatttctaactcagcatatactcgacatagaaattacaaaggaaaatcatgataggataggaaaatgatttattttatc 5787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 28115853 - 28116040
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    ||||||||||| |||||||| |  |||| |||||||||||||||| |||||||||| ||| |||||||||||||||| ||| |||||||||||  |||||    
T  28115853 taatagaaaatgcatgctatcataatttaaaaaatgacaatattttaaaaatggcaaaatctcaagataataaataaagaatgatcttctaattccatca 28115952  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    ||||||||||||||  | | ||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||    
T  28115953 ggataatttctaacacaacttatactcaggatagaaattacaaaggaaagttaggataggataggaaaatggtttattttatcttatc 28116040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 44290095 - 44290246
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  || |||||||||||| ||| |    
T  44290095 taatagaaaatacatgctatcattattttaaaaatgataatattttaaaaatggcagaatatcaagataataaataattaatgatcttctaatctcatta 44290194  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtc 273  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  44290195 ggataacttctaactcagcctatactcaggatataaattacaaaggaaagtc 44290246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 123 - 319
Target Start/End: Complemental strand, 3767970 - 3767773
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | ||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||| ||||     
T  3767970 taatagaaaatacatgctatcattattttaaaaacgacaatattttaaaaataacagaatatcaagataataaataaggaatgatattctaatctcatct 3767871  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||| ||||  ||| |||||| | ||||||||| ||||||||||||||  ||| ||||| |||||| |||||||||||||||| || ||||||    
T  3767870 ggataatttataactcagcttatacttatgatataaatgacaaaggaaagtcaaaataagatagagaaatgatttattttatcctatcactttggtgc 3767773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 309
Target Start/End: Complemental strand, 34940521 - 34940338
Alignment:
Q  127 agaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggat 225  Q
    |||||||||||| ||| | |||||||||||||| |||||||  |||| || ||||||||||||||||||||||| |  ||| |||||||| |||||||||    
T  34940521 agaaaatacatgttatcattattttaaaaatgataatatttttaaaaaggaagaatatcaagataataaataagaattgattttctaatcccatcaggat 34940422  T
Q  226 aatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    ||||| |||   ||| ||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||    
T  34940421 aatttataaatcagcatatactcaggatagaaattacaaaggaaagtcaggataggatatgaaaatggtttattttatcctatc 34940338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 34514078 - 34513934
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| | ||     
T  34514078 taatggaaaatacatgctatcattattttaaaa-tgacaatattttaaaaatggcagaatatcaagataataaataagaaatgatcttctaatctcgtcc 34513980  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaagg 267  Q
    ||||||||||||||  | | |||||||| |||| ||||||||||||    
T  34513979 ggataatttctaactcatcttatactcaagatagaaattacaaagg 34513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 130 - 319
Target Start/End: Complemental strand, 17702355 - 17702165
Alignment:
Q  130 aaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataat 228  Q
    ||||||||| ||| | ||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||| ||  ||||||||||   ||||||||| |    
T  17702355 aaatacatgatatcattattttaaaaatgacaacattttaaaaatggaagaatatcatgataataaataagaaattatcttctaattctatcaggatagt 17702256  T
Q  229 ttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    |||||||  |   ||||||||||||| |||||||||||||||| || |||| |||| | |||  |||||||||||| ||||||| ||||||    
T  17702255 ttctaactcaatttatactcaggataaaaattacaaaggaaagacaagataggataagaaaacagtttattttatcttatctctttggtgc 17702165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 53923908 - 53923756
Alignment:
Q  167 taaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaag 266  Q
    |||||||| |||||||||| |||||||| ||||||| |||||||| ||   || |||||| |||||||||    ||||| || ||| | |||||||||||    
T  53923908 taaaaatgacagaatatcatgataataattaaggaatgatcttcttatgctattaggatagtttctaacccgatctatattcgggacaaaaattacaaag 53923809  T
Q  267 gaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
     |||  || |||||||| ||||||| |||||||||||||||||||| ||||||    
T  53923808 aaaaaccaagatatgatggggaaatagtttattttatcctatctctttggtgc 53923756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 36198624 - 36198665
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36198624 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 36198665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 44289435 - 44289478
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  44289435 acattaatcttctcatgtgtttgatgcgcacatgataacaaaca 44289478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 54103407 - 54103470
Alignment:
Q  249 aggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    |||||| |||||| ||||  ||||||| |||||||||| ||| |||||||||||||||||||||    
T  54103407 aggataaaaattataaagataagtcagaatatgataggaaaacggtttattttatcctatctct 54103470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 34940645 - 34940601
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||    
T  34940645 acattaatcatatcatgtgtttgatgcgcacatgatgacaaacag 34940601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 37910472 - 37910516
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  37910472 acattaatcatatcatgtgtttgatgcacacatgataacaaacag 37910516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 45498982 - 45499025
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||    
T  45498982 acattaatcatatcatgtgtttgatgcacacatgataacaaaca 45499025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 5787121 - 5787155
Alignment:
Q  13 tatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    |||||||||||||||| ||||||||||||||||||    
T  5787121 tatcatgtgtttgatgcgcacatgataacaaacag 5787155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 28115542 - 28115584
Alignment:
Q  4 cattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    |||||||| ||||||||||||||||  ||||||||||||||||    
T  28115542 cattaatcatatcatgtgtttgatggccacatgataacaaaca 28115584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 28622840 - 28623037
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  28622840 taatagaaaatacatgctatcattatttaaaaaatgacaatattttaaaaatcgcagaatatcaagataataaataaggaatgatcttctaatctcatca 28622939  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||| |||||  |||| ||||||||||| ||||| || ||||||    
T  28622940 ggataatttctaacacagcttatactcaggataaaaattacaaaggaaagtcaggataggatagaaaaatagtttattttattctatccctttggtgc 28623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 49549734 - 49549551
Alignment:
Q  136 atgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaa 234  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||| || |||    
T  49549734 atgctatcattattttaaaaatgacaatattttaaaaatggcagaatatcaagataataaataaggaatgatcttcaaatcccattaggataacttttaa 49549635  T
Q  235 cctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    || |  |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||    
T  49549634 cccaatctatactcat-atataaattacaaaggaaagtcaggatatgatagggaaatgatttattttatcctatccctttggtgc 49549551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 319
Target Start/End: Original strand, 37346973 - 37347136
Alignment:
Q  157 tgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatat 255  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||| | | |||||||||||||     
T  37346973 tgacaatatttttaaaatggcagaatatcaggataataaataaggaatgatcttctaatcccatcatgataatttctaacccatcgtatactcaggatag 37347072  T
Q  256 aaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||||| |||||||| |||||  ||||||||||||||||| |||| || ||||||    
T  37347073 aaattacaaaggaaaatcaggataggatagaaaaatggtttattttatcatatccctttggtgc 37347136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 19910236 - 19910044
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcac--at 219  Q
    |||||||||||||||||||| | ||||||||||||   ||||||| |||||| ||| |||||||||||||| ||||||| | |||||||||||| |  ||    
T  19910236 taatagaaaatacatgctattattattttaaaaatataaatattttaaaaattgcaaaatatcaagataattaataaggcatgatcttctaatctcttat 19910137  T
Q  220 caggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
     |||||||||||||||| |    ||||||||||||  ||||| ||||||||||||| ||| |||||  ||||||||||||||||| |||||||    
T  19910136 taggataatttctaacccattaaatactcaggataacaattataaaggaaagtcagtatacgatagaaaaatggtttattttatcttatctct 19910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 10306761 - 10306901
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttcta--atcacatcaggataatttctaacctagcctatactcaggatataaattac 262  Q
    |||||||||| || ||||||| ||||||||||||| || |||||| ||  |||  |||| |||| |||||||   ||| |||||||| |||| |||||||    
T  10306761 tttaaaaatgacaaaatatcatgataataaataagaaatgatcttttataatcctatcatgatagtttctaatgcagcttatactcaagataaaaattac 10306860  T
Q  263 aaaggaaagtcaggatatgatagggaaatggtttattttat 303  Q
     ||||||| ||| ||||| ||||| ||||||||||||||||    
T  10306861 gaaggaaaatcatgatataataggaaaatggtttattttat 10306901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 37346166 - 37346209
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  37346166 acattaatcctatcatgtgtttgatgcgcacatgataacaaaca 37346209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 52268289 - 52268248
Alignment:
Q  6 ttaatcttatcatgtgtttgatgtgcacatgataacaaacag 47  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  52268289 ttaatcctatcatgtgtttgatgcgcacatgataacaaacag 52268248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 19910366 - 19910323
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| || ||||||||||||||    
T  19910366 acattaatcctatcatgtgtttgatgcgcccatgataacaaaca 19910323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 35508883 - 35508950
Alignment:
Q  243 atactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatct 310  Q
    |||| ||||||| |||||||||||| |||||   ||| |||| | |||||||||||||||||||||||    
T  35508883 atacccaggataaaaattacaaaggcaagtcgtaataggataagaaaatggtttattttatcctatct 35508950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 10306616 - 10306660
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatg-ataacaaaca 46  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||    
T  10306616 acattaatcatatcacgtgtttgatgtgcacatgaataacaaaca 10306660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 18503004 - 18503203
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||    
T  18503004 taatagaaaatacatgctatcattattttaaaaatgacaatatttcaaaaatggcagaatatcaagataattaataaagaatgatcttctaatcccatca 18503103  T
Q  222 ggataatttctaacctagcc--tatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    | ||||||||||||  ||||  |||||||| |||| |||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  18503104 gcataatttctaacacagcctatatactcaagatagaaattacaaatgaaaatcaggataggataggaaaatggtttattttatcctatctctttggtgc 18503203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 15672890 - 15673077
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||| |||||||||  ||||||  |||||||||||||||||||||||||| ||||||||||||   |||    
T  15672890 taatagaaaatacatgctatcattattttaaaaataacaatattttcaaaatgttagaatatcaagataataaataaggaatgatcttctaatc---tca 15672986  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||||| |||||||       ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  15672987 ggataatttctaacccagcctat-------atataaattgcaaaggaaagtcaggatatgataggaaaatggtttattttatcctatctctttggtgc 15673077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 123 - 304
Target Start/End: Complemental strand, 34703272 - 34703087
Alignment:
Q  123 taatagaaaatacat--gctataactattttaaaaatgacaatattta-aaaatggcagaatatcaa-gataataaataaggaaagatcttctaatcaca 218  Q
    |||||||||||||||  ||||| | ||||||||||||||||||||||  ||||| | |||||||||| |||||||||||||||| |||||||||||| ||    
T  34703272 taatagaaaatacatatgctatcattattttaaaaatgacaatattttcaaaatagtagaatatcaaagataataaataaggaatgatcttctaatccca 34703173  T
Q  219 tcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 304  Q
    |||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  34703172 tcaggatagtttctaacccaacctatcctcatgatataaattacaaaggaaagtcaggatatgataggaaaatagtttattttatc 34703087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 34866371 - 34866447
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatt-taaaaatggcagaatatcaagataataaataa 198  Q
    ||||||||||||||||| || | |||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  34866371 taatagaaaatacatgcaatcattattttaaaaataacaatattataaaaatggcagaatatcaatataataaataa 34866447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 319
Target Start/End: Complemental strand, 28429154 - 28428979
Alignment:
Q  146 tattttaaaaatgacaa-tattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagccta 243  Q
    |||||||||||||| || ||||| |||||||||||||||||| |||||||| ||||||| ||  || |||||  || ||||||||||| |||||| | ||    
T  28429154 tattttaaaaatgagaaatattttaaaaatggcagaatatcatgataataactaaggaatgaatttataatcctattaggataatttcaaacctaacata 28429055  T
Q  244 tactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    || | |  |||||||||||||||  |||| |||||| |||    ||||  ||||||||||||||| ||| ||||||    
T  28429054 tatttaaaatataaattacaaagataagttaggataagattacaaaataatttattttatcctatttctttggtgc 28428979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 6110255 - 6110188
Alignment:
Q  242 tatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    ||||||||||||||||||||||||||||||| | |||| |||||  ||||| ||||||||||| ||||    
T  6110255 tatactcaggatataaattacaaaggaaagttaagataggatagaaaaatgatttattttatcttatc 6110188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 34183262 - 34183115
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    |||||||| || ||||||||| | |||||| ||||||| ||  || |||| |  ||||| ||||||   ||  ||| ||||||| ||||| |||||| ||    
T  34183262 tttaaaaacggaagaatatcatggtaataagtaaggaatgaatttgtaataatgtcagggtaattttatactaagcttatactccggataaaaattataa 34183163  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    ||| ||||||||||| |||||  |||| ||||||||||||||||||||    
T  34183162 aggcaagtcaggataggatagaaaaatagtttattttatcctatctct 34183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 34203851 - 34203704
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    |||||||| || ||||||||| | |||||| ||||||| ||  || |||| |  ||||| ||||||   ||  ||| ||||||| ||||| |||||| ||    
T  34203851 tttaaaaacggaagaatatcatggtaataagtaaggaatgaatttgtaataatgtcagggtaattttatactaagcttatactccggataaaaattataa 34203752  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    ||| ||||||||||| |||||  |||| ||||||||||||||||||||    
T  34203751 aggcaagtcaggataggatagaaaaatagtttattttatcctatctct 34203704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 34866251 - 34866294
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  34866251 acattaatcttatcatgtgtttgatgcgcacatgataacaaaca 34866294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 17508667 - 17508733
Alignment:
Q  146 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttct 211  Q
    |||| |||||||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  17508667 tattataaaaatgacaacattttaaaaatggcagaacatcatgataataaataaggaatgatcttct 17508733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 17544547 - 17544481
Alignment:
Q  146 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttct 211  Q
    |||| |||||||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  17544547 tattataaaaatgacaacattttaaaaatggcagaacatcatgataataaataaggaatgatcttct 17544481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 6110302 - 6110260
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatc 207  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  6110302 tttaaaaatgacagaatatcaagataataaataaggaatgatc 6110260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 3480695 - 3480832
Alignment:
Q  163 tatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattac 262  Q
    ||||| ||||||  ||||||| | |||||||||||||||| ||  | |||||| ||||| ||||  ||||||| |||  ||| |||| |||| |||||||    
T  3480695 tattttaaaatgaaagaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtttatgctcaagataaaaattac 3480794  T
Q  263 aaaggaaagtcaggatatgatagggaaatggtttattt 300  Q
    || || || ||| |||| |||||| ||||| |||||||    
T  3480795 aatggcaaatcacgataagataggaaaatgatttattt 3480832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 25102757 - 25102676
Alignment:
Q  238 agcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||||||| |||||||||| | || ||| |||| |||| | ||||  ||||||||||||||||| | ||||||    
T  25102757 agcctatactcaggataaaaattacaaaagtaattcacgataggatacgaaaataatttattttatcctatctatttggtgc 25102676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 40619623 - 40619820
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||| |||||||||||| ||| |    
T  40619623 taataaaaaatacatgctatcattattttaaaaatgacaatattttaaaaataacagaatatcaaggtaataaataaggaatgatcttctaatcccataa 40619722  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    | ||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||| |||| || ||||||    
T  40619723 gtataatttctaacccaacctatactcaggatagaaattacgaaggaaagtcaggatatgatagaaaaatggtttattttatcatatccctttggtgc 40619820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 123 - 304
Target Start/End: Original strand, 13996080 - 13996262
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||    
T  13996080 taataggaaatacatgctatcattattttaaaaatgacaatatttttaaaatggaagaatatcaaaataataaataaggaatgatcttctaatcccatca 13996179  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 304  Q
    ||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||  | ||| |||||||||||    
T  13996180 ggataatttctaacccaacttatactcaggatagaaattacaaaggaaagtcaggatatgatagaaacatgatttattttatc 13996262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 319
Target Start/End: Complemental strand, 41595475 - 41595278
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||  ||||||||||||||||||||||  || |||||||||||| |||||    
T  41595475 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatgaaagaatatcaagataataaataaaaaatgatcttctaatcccatca 41595376  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    ||||||||||||||  | | ||||||||||||| ||||||||| |||||||||| |||||||||  | |||||||||||||||| |||||| ||||||    
T  41595375 ggataatttctaactcaacttatactcaggatagaaattacaatggaaagtcagaatatgatagaaatatggtttattttatccaatctctttggtgc 41595278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 124 - 309
Target Start/End: Original strand, 13349429 - 13349615
Alignment:
Q  124 aatagaaaatacatgctataactattttaaaaatgacaatatttaaaa-atggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 222  Q
    |||||||||||||| |||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  13349429 aatagaaaatacattctatcattattttaaaaatgataatatttaaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcgcatcag 13349528  T
Q  223 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||||||||||||  | | |||||| |||||| ||||||||||||||||| |||| | |||| | | || |||||||||||||||||    
T  13349529 gataatttctaactcatcatatacttaggatagaaattacaaaggaaagttaggagaggataagaatattgtttattttatcctatc 13349615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 286
Target Start/End: Complemental strand, 19695918 - 19695756
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||| ||||||| | |||||||||| ||||||||||| |||||||  |||||||||||||||||||||||| | |||||||||||  |||||    
T  19695918 taatagaaaatatatgctatcattattttaaaagtgacaatattttaaaaatg--agaatatcaagataataaataagggatgatcttctaattccatca 19695821  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagg 286  Q
    ||||||||||||||  ||| |||||||| |||| ||||||||||| |||||| ||||| ||||||    
T  19695820 ggataatttctaactcagcttatactcaagatagaaattacaaagaaaagtcgggataggatagg 19695756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 123 - 309
Target Start/End: Complemental strand, 27338944 - 27338768
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| || ||||| |||||    
T  27338944 taatagaaaatacatgctatcattattttaaaaatgataatattttaaaaatgacagaatatcaagataataaataaggaatgatattataatcccatca 27338845  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||| |||||||           ||||||  || |||||||||||||||||||||||| |||||  ||||||||||||||||| ||||    
T  27338844 ggatcatttcta-----------actcagcctaaaaattacaaaggaaagtcaggataggatagaaaaatggtttattttatcatatc 27338768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 37485746 - 37485638
Alignment:
Q  209 tctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctat 308  Q
    ||||||| |||||||||||||||||||  ||| |||  ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  37485746 tctaatcccatcaggataatttctaactcagcatat--tcatgatagaaattacaaaggaaagtcaggatatgataggaaaatggtttattttatcatat 37485649  T
Q  309 ctctgtggtgc 319  Q
    || | ||||||    
T  37485648 ctttttggtgc 37485638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 40619505 - 40619546
Alignment:
Q  5 attaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40619505 attaatcttatcatgtgtttgatgtgcacatgataacaaaca 40619546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 37485927 - 37485884
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  37485927 acattaatcatatcatgtgtttgatgtgcacatgataacaaaca 37485884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 15665348 - 15665492
Alignment:
Q  146 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctat 244  Q
    ||||||||||||| ||| |||| ||||||| || || |||| |||||||||||| |||  ||||||||||   |||||||||||||| |||| | |||||    
T  15665348 tattttaaaaatgtcaacattttaaaaatgacaaaaaatcatgataataaataaagaattatcttctaattctatcaggataatttccaacccaacctat 15665447  T
Q  245 act----caggatataaattacaaaggaaagtcaggatatgatag 285  Q
    ||     || |||| ||||||||||||||  |||| |||||||||    
T  15665448 acctacccatgatacaaattacaaaggaagatcagaatatgatag 15665492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 19696038 - 19695995
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  19696038 acattaatcttattatgtgtttgatgtgcacatgataataaaca 19695995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 27339065 - 27339023
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaac 45  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  27339065 acattaatcatatcatgtgtttgatgcgcacatgataacaaac 27339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 34355975 - 34355853
Alignment:
Q  179 aatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggat 278  Q
    ||||||| |||||||||||||||| ||  ||||||||  ||| || |||||| ||| | | | ||||||| ||||| |||||||||||| |||||||  |    
T  34355975 aatatcatgataataaataaggaatgaatttctaatcctatctgggtaatttataatccaacttatactcgggataaaaattacaaaggcaagtcagatt 34355876  T
Q  279 atgatagggaaatggtttatttt 301  Q
    | |||||| |||| |||| ||||    
T  34355875 acgataggaaaatagtttttttt 34355853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 37485807 - 37485758
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaa 172  Q
    |||||||||||||||| ||| | |||||||||||||| ||||||||||||    
T  37485807 taatagaaaatacatgttatcattattttaaaaatgaaaatatttaaaaa 37485758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 13995547 - 13995590
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||    
T  13995547 acattaatcctatcatgtgtttgatgcgcacatgataagaaaca 13995590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 41595594 - 41595551
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||    
T  41595594 acattaatcctattatgtgtttgatgtgcacataataacaaaca 41595551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 304
Target Start/End: Original strand, 40700954 - 40701135
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    |||||||||||||||||||| | || ||||||| |||||||||||  |||||| || ||||||||||| |||||||||||| |||||| |||||  ||||    
T  40700954 taatagaaaatacatgctatcattaatttaaaa-tgacaatatttttaaaatgtcataatatcaagatgataaataaggaatgatcttataatcctatca 40701052  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 304  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  40701053 ggataatttctaacacagcttatactcaggataaaaattacaaaggaaagtcaggatatgacagaaaaatggtttattttatc 40701135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 28457711 - 28457903
Alignment:
Q  123 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 221  Q
    ||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||| |||||    
T  28457711 taatagaaaatgcatgctatcattattttaaaaatgacaatattttaaaaatggcaatatatcaagataataaataaggaatgatcttctaatcccatca 28457810  T
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    |||||| |||||||| ||      ||||||||| |||||||||||||||||  ||||| |||||  ||||||||||||||||| |||| || ||||||    
T  28457811 ggataacttctaacccag-----tctcaggatagaaattacaaaggaaagttgggataagatagaaaaatggtttattttatcatatcactttggtgc 28457903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 165 - 309
Target Start/End: Original strand, 21748365 - 21748509
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||||| |||||| |||||||||    
T  21748365 tttaaaaatggcagaatatcaagataataaataaggaatggtcttctaatctcatcaggataatttttaacccagcctatacttaggatagaaattacaa 21748464  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattttatcctatc 309  Q
    |||||| |||  ||| |||||| |||||||| |||||||| ||||    
T  21748465 aggaaaatcataataggataggaaaatggttaattttatcatatc 21748509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 33072790 - 33072676
Alignment:
Q  190 aataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaa 289  Q
    ||||||||||||| |||||| |||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||    
T  33072790 aataaataaggaatgatcttataatcctatcatgataatttctaacctagcctatactcaggatagaaattacaaaggaaacttaggatatgataggaaa 33072691  T
Q  290 atggtttattttatc 304  Q
    |||||||||||||||    
T  33072690 atggtttattttatc 33072676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 45853076 - 45853214
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 264  Q
    |||||||||| |||||||||| |||||||||||||||| ||| || |||||  |||| ||||  || ||||| |||||||||||| |||| |||||||||    
T  45853076 tttaaaaatgacagaatatcacgataataaataaggaatgatattttaatccaatcaagatagattataacccagcctatactcacgataaaaattacaa 45853175  T
Q  265 aggaaagtcaggatatgatagggaaatggtttattttat 303  Q
     |||||||||  ||| || | | ||||||||||||||||    
T  45853176 tggaaagtcataataggaaaagaaaatggtttattttat 45853214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 303
Target Start/End: Original strand, 21153349 - 21153498
Alignment:
Q  155 aatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcac-atcaggataatttctaacctagcctatactcaggat 253  Q
    |||||||| ||||||||| | ||||||||||   ||||||| |||||| ||  || |||| |  |||| |||||||||||||  ||||||||||||||||    
T  21153349 aatgacaacatttaaaaacgacagaatatcattgtaataaacaaggaatgaatttttaattatgatcaagataatttctaactcagcctatactcaggat 21153448  T
Q  254 ataaattacaaaggaaagtcaggatatgatagggaaatggtttattttat 303  Q
    | || |||| || | |||||||||||||||||  ||||||| ||||||||    
T  21153449 aaaagttacgaaagcaagtcaggatatgatagaaaaatggtctattttat 21153498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 7818444 - 7818533
Alignment:
Q  222 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 312  Q
    ||||||||||||||| |  ||||| | |||||| ||||||||||||||||| || ||| |||||  |||| ||||||||||| ||||||||    
T  7818444 ggataatttctaacccaatctatatttaggatagaaattacaaaggaaagttagaataggatagtaaaat-gtttattttattctatctct 7818533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 33072848 - 33072806
Alignment:
Q  166 ttaaaaatggcagaatatcaagataataaataaggaaagatct 208  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  33072848 ttaaaaatggcagaatatcaagataataaataatgaatgatct 33072806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 46663405 - 46663287
Alignment:
Q  155 aatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggat 253  Q
    ||||||||||||| |||||||| |  |||||| | ||||||||| |||| ||  || ||||||  |||  ||| ||||||||||||| ||||||||||||    
T  46663405 aatgacaatattttaaaaatggtattatatcatggtaataaatatggaatgaatttataatcatgtcattatagtttctaacctagcttatactcaggat 46663306  T
Q  254 ataaattacaaaggaaagt 272  Q
    | |||||| ||||| ||||    
T  46663305 aaaaattaaaaaggcaagt 46663287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 54819666 - 54819711
Alignment:
Q  3 acattaatcttatcatgtgtttgatgt-gcacatgataacaaacag 47  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  54819666 acattaatcctatcatgtgtttgatgtcgcacatgataacaaacag 54819711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 40700834 - 40700877
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 46  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||    
T  40700834 acattaatcctatcatgtgtttgatgcacacatgataacaaaca 40700877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 21495265 - 21495228
Alignment:
Q  165 tttaaaaatggcagaatatcaagataataaataaggaa 202  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  21495265 tttaaaaatgacagaatatcatgataataaataaggaa 21495228  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 41864798 - 41864839
Alignment:
Q  3 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 44  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  41864798 acattaatcttatcatgtatttgatgcacacatgataacaaa 41864839  T

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Target: scaffold0957 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 319
Target Start/End: Complemental strand, 1885 - 1693
Alignment:
Q  130 aaatacatgctataactattttaaaaatgacaata-tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataat 228  Q
    ||||||| | ||||| ||||||||||||||||| | ||||||||||  ||||||||| || |||||||||  |  ||  ||||||    |||| |||| |    
T  1885 aaatacacgatataattattttaaaaatgacaaaattttaaaaatgatagaatatcatgaaaataaataacaactgaatttctaaatttatcaagatagt 1786  T
Q  229 ttctaacctagc--ctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 319  Q
    |||||||||| |   |||| ||| |||| ||||||||||   |||| |||||| |||||  ||||| ||||||| ||||||||||| ||||||    
T  1785 ttctaacctaacagatatagtcatgataaaaattacaaaaccaagttaggataagatagaaaaatgatttatttcatcctatctctttggtgc 1693  T

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