View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4820_low_1 (Length: 457)

Name: NF4820_low_1
Description: NF4820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4820_low_1
NF4820_low_1
[»] chr7 (1 HSPs)
chr7 (20-448)||(19806394-19806822)
[»] chr2 (29 HSPs)
chr2 (20-286)||(39136195-39136461)
chr2 (25-384)||(39474174-39474542)
chr2 (25-302)||(39416266-39416546)
chr2 (33-291)||(39458118-39458376)
chr2 (294-441)||(39135998-39136145)
chr2 (26-289)||(39488088-39488351)
chr2 (25-201)||(39151897-39152073)
chr2 (34-289)||(39422395-39422650)
chr2 (37-196)||(39129487-39129646)
chr2 (46-252)||(39123470-39123676)
chr2 (29-197)||(39601994-39602162)
chr2 (295-441)||(39422722-39422868)
chr2 (100-200)||(39450499-39450599)
chr2 (113-240)||(27154970-27155095)
chr2 (128-200)||(39214925-39214997)
chr2 (128-200)||(39399013-39399085)
chr2 (108-196)||(39495523-39495611)
chr2 (75-200)||(39199429-39199554)
chr2 (128-197)||(39382213-39382282)
chr2 (295-387)||(39416566-39416658)
chr2 (109-187)||(39391647-39391725)
chr2 (130-200)||(44614473-44614543)
chr2 (132-202)||(44623617-44623687)
chr2 (129-200)||(39220162-39220233)
chr2 (128-188)||(39161102-39161162)
chr2 (128-188)||(39208032-39208092)
chr2 (158-194)||(39479188-39479224)
chr2 (218-251)||(39427772-39427805)
chr2 (295-344)||(39458014-39458063)
[»] chr6 (1 HSPs)
chr6 (128-196)||(16112428-16112496)
[»] chr8 (1 HSPs)
chr8 (130-201)||(44951384-44951455)
[»] chr5 (1 HSPs)
chr5 (128-187)||(33559636-33559695)


Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 19806822 - 19806394
Alignment:
Q  20 aaacggagctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806822 aaacggagctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaa 19806723  T
Q  120 tttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatc 219  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806722 tttcctttttcttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatc 19806623  T
Q  220 ctcaaatgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggcaggaacatcatcatatggtgttggagacacc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806622 ctcaaatgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggcaggaacatcatcatatggtgttggagacacc 19806523  T
Q  320 ttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgtagttgtatgcctcttcttatgaaaccataatgata 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806522 ttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgtagttgtatgcctcttcttatgaaaccataatgata 19806423  T
Q  420 aagtatcatcatcatcttcttcttcttct 448  Q
    |||||||||||||||||||||||||||||    
T  19806422 aagtatcatcatcatcttcttcttcttct 19806394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 39136461 - 39136195
Alignment:
Q  20 aaacggagctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaa 119  Q
    |||| |||||||||||||||||||||||||||||||||||||| || | |||  |||||||||||||||||||||| | ||||||| |||||||  ||||    
T  39136461 aaaccgagctgcccttcctttgctacaaaatccttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatccctaa 39136362  T
Q  120 tttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatc 219  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136361 tttcctttttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatc 39136262  T
Q  220 ctcaaatgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatg 286  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39136261 ctcaaatgatttttctaccaacacaagtttttctttgagtgtggaaaatgatttatcagttgacatg 39136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 25 - 384
Target Start/End: Original strand, 39474174 - 39474542
Alignment:
Q  25 gagctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcc 124  Q
    |||||| || ||||||||||||||||||||||||||||  | | |||  ||||||||||||||| |||||| ||| ||||| ||||||| |||||||| |    
T  39474174 gagctgtccatcctttgctacaaaatccttgacacattcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgactaattttc 39474273  T
Q  125 tttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatcctcaa 224  Q
    ||||||||||||||||| |||| | |||| ||||||||||||||||||||||| |||||||||  || ||||| ||| ||| | |||  |  ||||||||    
T  39474274 tttttcttattttcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctctccttttctatttgcgtcgtcctttggcaatcctcaa 39474373  T
Q  225 atgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggcaggaa---------catcatcatatggtgttggaga 315  Q
    ||||||||||||| ||  |||||||||  ||||||| ||||||||||||||| ||||||||||||||||         |||||||||||| |||||| ||    
T  39474374 atgatttttctacaaatgcaagttctttcttgagtgaggaaaatgatttatccgttgacatggcaggaacatcatcatcatcatcatatgatgttgggga 39474473  T
Q  316 caccttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgt 384  Q
    ||||||||||||||||||| |||| ||||||||| |||||  |||  |||||||||| || ||||||||    
T  39474474 caccttggatttcttcatcaaaccgcacaaggaactgttgttatcaaataccctcttaacaggcagtgt 39474542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 25 - 302
Target Start/End: Original strand, 39416266 - 39416546
Alignment:
Q  25 gagctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagcttt---gttaattctcccaacataactaatt 121  Q
    |||||| |||||||||||||||||||||||||||||||  | |||||   |||||||||||||| ||||||    ||||||||| |||||||||||||||    
T  39416266 gagctgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatt 39416365  T
Q  122 tcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatcct 221  Q
    ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||  | |  ||||||   ||||    
T  39416366 tccttttgcttattttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttcttttctacttgcatgtcccttctgcgttcct 39416465  T
Q  222 caaatgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggcaggaacatcatcat 302  Q
    |||||||||||||||  ||  ||||||||| |||||||  ||||| ||||||||||||||||||||||||||||| |||||    
T  39416466 caaatgatttttctataaatgcaagttcttttttgagttcggaaattgatttatcagttgacatggcaggaacataatcat 39416546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 33 - 291
Target Start/End: Complemental strand, 39458376 - 39458118
Alignment:
Q  33 cttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttctt 132  Q
    ||||||||||| ||||||||| ||||||||| | | |||   |||  |||||||||||||||| || |||||| ||||||||| || |||||||||||||    
T  39458376 cttcctttgctgcaaaatcctcgacacatttttcaattttggcctcgattttcttgcgagcttcgtcaattcttccaacataaatagtttcctttttctt 39458277  T
Q  133 attttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatcctcaaatgatttt 232  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| ||  ||||||||||||||||    
T  39458276 gttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctacttgtctcgtccttttgcaatcctcaaatgatttt 39458177  T
Q  233 tctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggcagg 291  Q
    ||||||||    |||||||  || || | | ||||||||| ||||||||||||||||||    
T  39458176 tctaccaatgtgagttctttcttcagcgagaaaaatgattcatcagttgacatggcagg 39458118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 39136145 - 39135998
Alignment:
Q  294 catcatcatatggtgttggagacaccttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgtagttgtatg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||     
T  39136145 catcatcatatggtgttggagacaccttggatttcttcatcgaaccacacaaggaattgttgtcatcgaataccctcttaactgacagtgtagttgtatc 39136046  T
Q  394 cctcttcttatgaaaccataatgataaagtatcatcatcatcttcttc 441  Q
    ||||||||||||||||| |  |||||||| |||||||||||| |||||    
T  39136045 cctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttc 39135998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 39488088 - 39488351
Alignment:
Q  26 agctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcct 125  Q
    ||||| |||||||||||||||||||| ||||||||||  | | ||| |||||||||||||| | || ||| ||||||||| |||||| ||||||||||||    
T  39488088 agctgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttctagtgaacttcgttaattcttccaacacaactaatttcct 39488187  T
Q  126 ttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatcctcaaa 225  Q
    |||||||||||||||| |||||  |||| ||||||| |||||||||||| ||||||| ||||| ||||||||||||  | || ||| ||   ||||||||    
T  39488188 ttttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctacttgccttttccttttgcattcctcaaa 39488287  T
Q  226 tgatttttctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggca 289  Q
    |||  ||||||||||  ||||||||| ||| ||   |||||||||||| |||| ||||||||||    
T  39488288 tgaggtttctaccaatgcaagttcttttttcagcaaggaaaatgatttctcagatgacatggca 39488351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 39152073 - 39151897
Alignment:
Q  25 gagctgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcc 124  Q
    ||||||||||||||||||||||||||||||||||||||  | | ||| ||||||||||||||||| ||||| ||||||||| |||||| |  ||||||||    
T  39152073 gagctgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcc 39151974  T
Q  125 tttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttg 201  Q
    ||||||||||||||||| |||||| |||  |||||||||| ||||||||| ||||||| |||| |||||||||||||    
T  39151973 tttttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctacttg 39151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 289
Target Start/End: Original strand, 39422395 - 39422650
Alignment:
Q  34 ttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttctta 133  Q
    |||||||||||| || |||| ||||||||  | | ||| ||||||||||||||||   ||||  |||||||| ||||||| |||||||||||||||||||    
T  39422395 ttcctttgctacgaattcctcgacacattcttcaattttcccctgcattttcttgtatgcttccttaattcttccaacatcactaatttcctttttctta 39422494  T
Q  134 ttttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtctt-gcttctgatatcctcaaatgatttt 232  Q
    ||||| || ||||||||||| | |||||||||||||||||||||||||||| || |||||||||||| | | ||  ||||  || |||||||||||||||    
T  39422495 ttttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctacttctcttttcccttcacat-tcctcaaatgatttt 39422593  T
Q  233 tctaccaacacaagttcttctttgagtgtggaaaatgatttatcagttgacatggca 289  Q
    ||||| ||  |||||| || |||||||| ||||||||||  |||| |||||||||||    
T  39422594 tctacaaatgcaagttgttttttgagtgaggaaaatgatagatcaattgacatggca 39422650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 39129646 - 39129487
Alignment:
Q  37 ctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttattt 136  Q
    ||||||| ||||||||||||||||||  | | ||| |||||| ||||||||| ||||||  |||||||| ||| ||| |||||||||||||||| |||||    
T  39129646 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 39129547  T
Q  137 tcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttct 196  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  39129546 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 252
Target Start/End: Complemental strand, 39123676 - 39123470
Alignment:
Q  46 aaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttattttcaagatct 145  Q
    ||||||||||||| |||  | |||||  ||||||||||||||| ||| || || ||||||  |||||||||| |||||||||||| ||||||||||||||    
T  39123676 aaaatccttgacaaattcttcagtttttccctgcattttcttgtgagattcgtaaattctttcaacataactcatttcctttttcatattttcaagatct 39123577  T
Q  146 ttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttctgatatcctcaaatgatttttctaccaacacaa 245  Q
    ||| ||||  ||||||||||||||| |||||| ||||||||   ||||| ||||||  ||||  || ||   |||||| ||||||||||||| ||  |||    
T  39123576 ttggagcacccctcaatatctctctgtatggagtgcaatctatcctcttatacttgcctcttctttttgcattcctcatatgatttttctacaaatgcaa 39123477  T
Q  246 gttcttc 252  Q
    |||||||    
T  39123476 gttcttc 39123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 39602162 - 39601994
Alignment:
Q  29 tgcccttcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttt 128  Q
    |||||||||||  ||||||||||||| | |||||  | | |||  |||||||||||||   |||||| |  |||||  | || | |||||||||||||||    
T  39602162 tgcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaatttcctttt 39602063  T
Q  129 tcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttcta 197  Q
    ||||||||||||| ||||||| ||| |||| ||||||| |||||||||||||||||||  |||||||||    
T  39602062 tcttattttcaagctctttgcggcactcctgaatatctatctttatggactgcaatctattctcttcta 39601994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 441
Target Start/End: Original strand, 39422722 - 39422868
Alignment:
Q  295 atcatcatatggtgttggagacaccttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgtagttgtatgc 394  Q
    ||||||||||||||| || ||||||||||||||||||||| |||| ||||||||| |||||  ||| |||||| |||| || ||||||||  | |||| |    
T  39422722 atcatcatatggtgtcggggacaccttggatttcttcatcaaaccgcacaaggaactgttgttatcagataccttcttaacaggcagtgtgatagtatcc 39422821  T
Q  395 ctcttcttatgaaaccataatgataaagtatcatcatcatcttcttc 441  Q
    ||||||||| |||||| |  ||| |||| | |||||||||| |||||    
T  39422822 ctcttcttaggaaaccttgctgacaaaggaacatcatcatcatcttc 39422868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 39450599 - 39450499
Alignment:
Q  100 aattctcccaacataactaatttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctact 199  Q
    |||||| | |||| |||||| || |||||||||||||| ||| ||||||||||| |||||||||||| |||| ||||||||||||||| | |||||||||    
T  39450599 aattcttctaacacaactaacttgctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttctact 39450500  T
Q  200 t 200  Q
    |    
T  39450499 t 39450499  T

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Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 27154970 - 27155095
Alignment:
Q  113 taactaatttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgtgtcttgcttc 212  Q
    |||||||||||  ||||| ||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||   ||||||| ||||| | ||  ||     
T  27154970 taactaatttc--ttttcatatttccaagctctttggagcactcctcaatatctctctttatggactgcaatctttcctcttcttcttgtcttttctttt 27155067  T
Q  213 tgatatcctcaaatgatttttctaccaa 240  Q
    |||  || |||||| |||||||||||||    
T  27155068 tgaattcttcaaataatttttctaccaa 27155095  T

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Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 39214997 - 39214925
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 200  Q
    |||||||||||||| ||||| ||||| ||||||| || |||||||||||||||||||||| |||| |||||||    
T  39214997 ttcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctcttctcctctactt 39214925  T

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Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 39399013 - 39399085
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 200  Q
    ||||| ||| |||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  39399013 ttcttttttccaagttctttccagcagtcttcaatatctctctttatggactgcaatctcttctcttctactt 39399085  T

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Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 39495523 - 39495611
Alignment:
Q  108 caacataactaatttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttct 196  Q
    ||||| |||| |||||||||||  ||||| |||| |||||| |||  |||||||||||||||||||||||||||||||||  |||||||    
T  39495523 caacaaaactcatttccttttttatatttccaagctctttggagcgctcctcaatatctctctttatggactgcaatctctcctcttct 39495611  T

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Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 39199429 - 39199554
Alignment:
Q  75 cctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttat 174  Q
    |||||| || |||||||||||  | |||||| | ||||  ||||| ||  || |||||||||| ||| ||||||||||| || ||| |||||||||||||    
T  39199429 cctgcacttccttgcgagcttcatcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttat 39199528  T
Q  175 ggactgcaatctcctctcttctactt 200  Q
    ||||||||||||  ||||||| ||||    
T  39199529 ggactgcaatcttttctcttcaactt 39199554  T

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Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 39382213 - 39382282
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttcta 197  Q
    |||||||||| ||| ||||||||||| || ||| ||||||||||||||||||| |||||| |||||||||    
T  39382213 ttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttcta 39382282  T

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Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 39416566 - 39416658
Alignment:
Q  295 atcatcatatggtgttggagacaccttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgtagt 387  Q
    ||||||||||||| | || ||||||||||||||||||||| ||| ||| ||||||||||||  |||  || ||||||| | ||||||||||||    
T  39416566 atcatcatatggtttcggggacaccttggatttcttcatcaaacaacataaggaattgttgttatcaaatgccctcttaattggcagtgtagt 39416658  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 39391647 - 39391725
Alignment:
Q  109 aacataactaatttcctttttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctc 187  Q
    |||| |||||| || ||| ||||||| |||||| ||||||||||| || ||||||||| ||||||||||| ||||||||    
T  39391647 aacacaactaacttgcttgttcttatcttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctc 39391725  T

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Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 44614543 - 44614473
Alignment:
Q  130 cttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 200  Q
    ||||||||| || ||||||||||| | |||||||||||||||||| ||| |||||  ||||||||||||||    
T  44614543 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaattgcctctcttctactt 44614473  T

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Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 44623687 - 44623617
Alignment:
Q  132 tattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttgt 202  Q
    ||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||||    
T  44623687 tattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttctacttgt 44623617  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 39220233 - 39220162
Alignment:
Q  129 tcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 200  Q
    ||||| ||| ||||||||||||||| || ||| | ||||||||||||||||| ||||| |||||||| ||||    
T  39220233 tcttaatttgaagatctttgcagcactcttcagtttctctctttatggactgtaatcttctctcttcaactt 39220162  T

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Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 39161162 - 39161102
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcc 188  Q
    ||||||| |||||| ||||||||||| || ||||||||| |||  ||||||||||||||||    
T  39161162 ttcttatcttcaagctctttgcagcattcttcaatatctttctggatggactgcaatctcc 39161102  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 39208032 - 39208092
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcc 188  Q
    ||||||| |||||| ||||||||||| || ||||||||| |||  ||||||||||||||||    
T  39208032 ttcttatcttcaagctctttgcagcattcttcaatatctttctggatggactgcaatctcc 39208092  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 39479188 - 39479224
Alignment:
Q  158 tcaatatctctctttatggactgcaatctcctctctt 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  39479188 tcaatatctctctttatggactgcaatctcttctctt 39479224  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 39427772 - 39427805
Alignment:
Q  218 tcctcaaatgatttttctaccaacacaagttctt 251  Q
    ||||||||||||||||||||||| ||||||||||    
T  39427772 tcctcaaatgatttttctaccaatacaagttctt 39427805  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 39458063 - 39458014
Alignment:
Q  295 atcatcatatggtgttggagacaccttggatttcttcatcgaaccacaca 344  Q
    ||||||||| |||| ||| |||||||| |||||||| |||||||||||||    
T  39458063 atcatcatacggtgatggtgacacctttgatttcttaatcgaaccacaca 39458014  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 16112496 - 16112428
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttct 196  Q
    |||||||||  ||| ||||| || || || ||||||||||||||||||||||||||| || ||||||||    
T  16112496 ttcttatttcgaagctctttacaacattcttcaatatctctctttatggactgcaatttcttctcttct 16112428  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 44951384 - 44951455
Alignment:
Q  130 cttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttg 201  Q
    |||||||||||| |||| |||||| | || ||||||||||||||| | | |||||  |||||||||||||||    
T  44951384 cttattttcaagctcttcgcagcacttcttaatatctctctttatcggccgcaattgcctctcttctacttg 44951455  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 33559695 - 33559636
Alignment:
Q  128 ttcttattttcaagatctttgcagcaatcctcaatatctctctttatggactgcaatctc 187  Q
    ||||||| |||||| ||||||||||| || ||||||||| ||||||  ||||||||||||    
T  33559695 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctc 33559636  T

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