View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4821-Insertion-1 (Length: 1016)

Name: NF4821-Insertion-1
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4821-Insertion-1
NF4821-Insertion-1
[»] chr5 (9 HSPs)
chr5 (5-685)||(31078598-31079279)
chr5 (821-969)||(31079329-31079477)
chr5 (593-732)||(10671889-10672027)
chr5 (225-338)||(9162248-9162361)
chr5 (186-311)||(40816968-40817094)
chr5 (492-582)||(9164295-9164385)
chr5 (858-985)||(9164484-9164608)
chr5 (765-803)||(31079278-31079316)
chr5 (760-797)||(9164433-9164470)
[»] chr8 (1 HSPs)
chr8 (198-585)||(7043799-7044194)
[»] chr3 (1 HSPs)
chr3 (199-585)||(51488401-51488796)
[»] chr2 (1 HSPs)
chr2 (189-304)||(11928119-11928234)
[»] chr4 (1 HSPs)
chr4 (198-359)||(54858280-54858439)


Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 5 - 685
Target Start/End: Original strand, 31078598 - 31079279
Alignment:
Q  5 acataaaacagacaagtcaattgaacatgtggtggatgatgttttattacaataattggacaattctttattccaaattaccttaaactctttatatgaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078598 acataaaacagacaagtcaattgaacatgtggtggatgatgttttattacaataattggacaattctttattccaaattaccttaaactctttatatgaa 31078697  T
Q  105 gacaaaaaccttaatcatataataatcaagtagaaaatcgtttatcatacccggaaagttaaggattaaataaacatttggatcattgatattagggcaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078698 gacaaaaaccttaatcatataataatcaagtagaaaatcgtttatcatacccggaaagttaaggattaaataaacatttggatcattgatattagggcaa 31078797  T
Q  205 attataacaacctccccaagttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccctctgttacattctgttaactctc 304  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31078798 attataacaacctccctaagttatggctaaatacaacaaacctcccttctattttcaaaaccatcatacacctcccctctgttacattatgttaactctc 31078897  T
Q  305 ggttagaatttagaaatcagcatagttaggtcatgcgacctttgcgtttcctctctctcagaaccgtgaaaaatcatgggattactactcatcatcctcc 404  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  31078898 cgttagaatttagaaatcagcatagttaggtcatgcgacctttgcgtttcctctctctcaaaactgtgaaaaatcatgggattactactgatcatcctcc 31078997  T
Q  405 ttctctccatagttgttcatcgtcactctcacttgtatctct-atcattctcctttcatcactcactaccaaccactgtttttgtaccttttctctatcg 503  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  31078998 ttctctccatagttgttcatcgtcactctcacttgtatctctgatcatgcttctttcatcactcactaccaaccactgtttttgtgccttctctctatcg 31079097  T
Q  504 ttgtcatcgtcgctctcgacggtaattgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattattttttatgtttgctgttctagtt 603  Q
     ||||||||||||||||||  ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31079098 ctgtcatcgtcgctctcgagagtaattgcggcatcgttctttctggtttctagtgtgttgttttcattcaccattattttttatgtttgctgttctagtt 31079197  T
Q  604 aatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctgggaaatccagtggttagcagatttta 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31079198 aatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctaggaaatccagtggttagcagatttta 31079279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 821 - 969
Target Start/End: Original strand, 31079329 - 31079477
Alignment:
Q  821 ctgtctggtgtaaaa-ttctatcacaggcaccaaatcaagaaatttataaattctatagattttaatctcttcttacctccttgatgccaatatatagtg 919  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||   |||||||||||||||||||||||||    
T  31079329 ctgtctggtgtaaaaattcaatcacaggcaccaaatcaagaaatttataa-ttctatagattttagtctctt---acctccttgatgccaatatatagtg 31079424  T
Q  920 ataaccttttctttc-agtcatt-agaggtgttt-catttggttgattaaatt 969  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  31079425 ataaccttttctttcaagtcattaagaggtgtttccatttggttgattaaatt 31079477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 593 - 732
Target Start/End: Original strand, 10671889 - 10672027
Alignment:
Q  593 ctgttctagttaatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctgggaaatccagtggttagcagattttaaaaatga 692  Q
    |||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||   |||||| |||||| || ||||  ||||||||    
T  10671889 ctgttctatttaatatgctttgttggtaacttggtgtagactctagttttcttgtacatcattcct-ttaaatccggtggttggctgattcgaaaaatga 10671987  T
Q  693 taacactcaattttcgaacacctttagaaccatttgtatg 732  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  10671988 taacactcaattttcaaacaccttgagaaccatttgtatg 10672027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 9162248 - 9162361
Alignment:
Q  225 ttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccctctgttacattctgttaactctcggttagaatttagaaatcag 324  Q
    ||||| |||||||||| |||||| || |||||||| ||||| |||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||    
T  9162248 ttatgactaaatacaacaaacctaccctctattttaaaaactatcatatacctcccctctgttgcattctgttaactctccgttagaatttagaaattag 9162347  T
Q  325 catagttaggtcat 338  Q
    |||| |||||||||    
T  9162348 cataattaggtcat 9162361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 186 - 311
Target Start/End: Complemental strand, 40817094 - 40816968
Alignment:
Q  186 atcattgatattagggcaaattataacaacctcccc-aagttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccctct 284  Q
    |||||||||  ||||| ||||||||||||||||||| ||||| | ||||||||||  ||||||||| ||||||||| |||||| || | |||||||||||    
T  40817094 atcattgattatagggaaaattataacaacctcccctaagttttagctaaatacatcaaacctcccctctattttcgaaaccaccacatacctcccctct 40816995  T
Q  285 gttacattctgttaactctcggttaga 311  Q
    ||||||||| ||||| |||| ||||||    
T  40816994 gttacattccgttaattctccgttaga 40816968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 492 - 582
Target Start/End: Original strand, 9164295 - 9164385
Alignment:
Q  492 ttttctctatcgttgtcatcgtcgctctcgacggtaattgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattattt 582  Q
    ||||||| ||||||||| ||||||||||| || ||||||||||||||| ||||||| |||| || |||||||||||| |||||||||||||    
T  9164295 ttttctccatcgttgtcgtcgtcgctctcaacagtaattgcggcatcgttctttctagtttctaatgtgttgttttcgttcaccattattt 9164385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 858 - 985
Target Start/End: Original strand, 9164484 - 9164608
Alignment:
Q  858 agaaatttataaattctatagattttaatctcttcttacctccttgatgccaatatatagtgataaccttttctttc-agtcatt-agaggtg-tttcat 954  Q
    |||||||||||| |||||||||||||| ||||||   |||||||||||||||    ||||||||||||||||||||| ||||||| || |||| ||||||    
T  9164484 agaaatttataa-ttctatagattttagtctctt---acctccttgatgcca----atagtgataaccttttctttcaagtcattaagtggtgttttcat 9164575  T
Q  955 ttggttgattaaa-ttaaagctg-agcttaagt 985  Q
    ||||||||||||| ||||||||| |||||||||    
T  9164576 ttggttgattaaatttaaagctgaagcttaagt 9164608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 765 - 803
Target Start/End: Original strand, 31079278 - 31079316
Alignment:
Q  765 tacataataataaagtaaaacctgtctggtgtattaacc 803  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31079278 tacataataataaagtaaaacctgtctggtgtattaacc 31079316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 760 - 797
Target Start/End: Original strand, 9164433 - 9164470
Alignment:
Q  760 ctttctacataataataaagtaaaacctgtctggtgta 797  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  9164433 ctttctacataataataaattaaaacctgtctggtgta 9164470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 198 - 585
Target Start/End: Complemental strand, 7044194 - 7043799
Alignment:
Q  198 agggcaaattataacaacctccc-caagttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccc-tctgttacattctg 295  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||   |||||||||    
T  7044194 agggcaaattataacaacctccctcaagttatggctaaatacaacaaacctcccctctattttcaaaaccatcatatacctccccctccactacattctg 7044095  T
Q  296 ttaactctcggt-tagaatttagaaatcagcatagttaggtcatgcgacctttgcgtttcctctctctcagaaccgtgaaaaatcatgggat--tactac 392  Q
    |||||||||  | |     || |||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||| ||| |||  ||||||    
T  7044094 ttaactctccctctctcccttggaaatcagcataattaggtcatgcgacctttgcgtttcctctctctcaaaaccgccaaaaattatgcgattctactac 7043995  T
Q  393 tcatcatcctccttctctccatagttgttcatcgtcactctcacttgtatctct-atcattctcct--ttcatcactcactaccaaccactgtttttgta 489  Q
    | |||||||||||||||||||  |||||||||| ||||| |||||||||||| | ||||| |||||  |||||||||||||||  |||||||||| |||     
T  7043994 tgatcatcctccttctctccaacgttgttcatcttcactgtcacttgtatctatgatcatcctcctacttcatcactcactactgaccactgtttatgtg 7043895  T
Q  490 ccttttctctatcgttgtcatcgtcgctctcgacggtaattgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattatttttt 585  Q
    |||| ||||||| |||||  |||| |||||   | ||||||| ||||||  ||| ||| |||| | ||||||||||||| ||||||||| ||||||    
T  7043894 ccttctctctattgttgttgtcgttgctcttagctgtaattgtggcatccttctgtctagtttctggtgtgttgttttcgttcaccattctttttt 7043799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 199 - 585
Target Start/End: Original strand, 51488401 - 51488796
Alignment:
Q  199 gggcaaattataacaacctccc-caagttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccctctgttacattctgtt 297  Q
    |||||||||||||||| ||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||| ||| |||    
T  51488401 gggcaaattataacaatctccctcaagttatgggtaaatacaataaacctcccctctattttcaaaaccatcatatacctcccctccgttaccttccgtt 51488500  T
Q  298 aactctcggt-tagaatttagaaatcagcatagttaggtcatgcgacctttgcgtttcctctctctcagaaccgtgaaaaatcatgggat--tactactc 394  Q
    ||||||| |  |     |||||||||| |||| ||||||||||||| |||||| |||||||||||||| |||||  |||||||||| |||  ||| |||     
T  51488501 aactctctgcctctccgttagaaatcaacataattaggtcatgcgatctttgcttttcctctctctcaaaaccgccaaaaatcatgcgattctaccactg 51488600  T
Q  395 atcatcctccttctctccatagttgttcatcgtcactctcacttgtatctct-atcattctcct--ttcatcactcactaccaaccactgtttttgtacc 491  Q
    ||| ||||||||||||||||||||||||||| |||  |||| |||||||||| ||||| | |||  |||||||||||||||  |||||||||| ||| |     
T  51488601 atcgtcctccttctctccatagttgttcatcttcaacctcaattgtatctctgatcatccccctccttcatcactcactactgaccactgtttctgtgca 51488700  T
Q  492 ttttctctatcgttgtcatcgtcgctctcgacggtaa-----ttgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattatttttt 585  Q
    || ||||||||||||   ||||||||||| |||||||     ||||||||||| ||||||| |||| | ||||||||||||| ||||||||| ||||||    
T  51488701 ttctctctatcgttg---tcgtcgctctcaacggtaattgtgttgcggcatcgttctttctagtttctggtgtgttgttttcgttcaccattctttttt 51488796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 11928119 - 11928234
Alignment:
Q  189 attgatattagggcaaattataacaacctccc-caagttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccctctgtt 287  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| | ||||||||||||||||||| |||| | |||||||    
T  11928119 attgatataagggcaaattataacaacctccctcaagttatggctaaatgcaacaaacctcccctttattttcaaaaccatcatatacct-ctctctgtt 11928217  T
Q  288 acattctgttaactctc 304  Q
    |||||||||||||||||    
T  11928218 acattctgttaactctc 11928234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 198 - 359
Target Start/End: Complemental strand, 54858439 - 54858280
Alignment:
Q  198 agggcaaattataacaacctcccc-aagttatggctaaatacaaaaaacctcccttctattttcaaaaccatcatacacctcccctctgttacattctgt 296  Q
    |||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||||| | ||||||||||| |||| || || ||||||||||||| ||| ||    
T  54858439 agggtaaactataacaacctcccccaagttatggataaatacaacaaacctcccctatattttcaaaatcatcgtatacgtcccctctgttacgttcagt 54858340  T
Q  297 taactctcggttagaatttagaaatcagcatagttaggtcatgcgacctttgcgtttcctctc 359  Q
    |||||||  ||||||| | | || |  ||||  || |||||||||||||||||||||||||||    
T  54858339 taactctatgttagaaatca-aagt--gcatcatttggtcatgcgacctttgcgtttcctctc 54858280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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