View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821-Insertion-11 (Length: 175)
Name: NF4821-Insertion-11
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821-Insertion-11 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 9e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 43385864 - 43385770
Alignment:
| Q |
81 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgct |
175 |
Q |
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| T |
43385864 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgct |
43385770 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 43385944 - 43385911
Alignment:
| Q |
11 |
gcaacctcttcttccaattaatgctaagttaatc |
44 |
Q |
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| T |
43385944 |
gcaacctcttcttccaattaatgctaagttaatc |
43385911 |
T |
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Target: chr6 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 8775288 - 8775194
Alignment:
| Q |
81 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgct |
175 |
Q |
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| T |
8775288 |
gctagctgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcagagttattttctgct |
8775194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 8775352 - 8775319
Alignment:
| Q |
11 |
gcaacctcttcttccaattaatgctaagttaatc |
44 |
Q |
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| T |
8775352 |
gcaacctcttcttccaattaatgctaagttaatc |
8775319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 1692084 - 1692178
Alignment:
| Q |
81 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgct |
175 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1692084 |
gctaactgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcacagttattttctgct |
1692178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 1692020 - 1692053
Alignment:
| Q |
11 |
gcaacctcttcttccaattaatgctaagttaatc |
44 |
Q |
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| T |
1692020 |
gcaacctcttcttccaattaatgctaagttaatc |
1692053 |
T |
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