View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4821-Insertion-3 (Length: 1003)
Name: NF4821-Insertion-3
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821-Insertion-3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 883; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 883; E-Value: 0
Query Start/End: Original strand, 8 - 988
Target Start/End: Complemental strand, 40116883 - 40115902
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116883 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
40116784 |
T |
|
| Q |
108 |
tcatctctaactataaatagagaggctaatgaaacttatca-aataattcaaaaacatttcattatattctctattattctctatatggtatcatctgcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
40116783 |
tcatctctaactataaatagagaggctaatgaaacttatcagaataattcaaaaacatttcattatattctctattattctctatatggtatcagaggcc |
40116684 |
T |
|
| Q |
207 |
ttttagcttaacagccatacgatccttaacctgtgcannnnnnnnncccccctttcaccatgtcttccgcaaatactaataacaatagctcttccacaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116683 |
ttttagcttaacagccatacgatccttaacctgtgcattttttttccccccctttcaccatgtcttccgcaaatactaataacaatagctcttccacaaa |
40116584 |
T |
|
| Q |
307 |
taacaacaacaatggttgcagtttcatggttggaaccaacactgtaactgtcctcaatacccaacattcacttaaactcaaaagtacaaattacccagct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40116583 |
taacaacaacaatggttgcagtttcatggttggaaccaacactgtaactgtcctcaatacccaacattcacttaaactcaaaagtacaaattacccagct |
40116484 |
T |
|
| Q |
407 |
tggaatgtccaaatgaatgctcttttcattggatatgatcttaaagggttcattgatggcacaaaaccgtgtcctacccaaactgatccagattttaatt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116483 |
tggaatgtccaaatgaatgctcttttcattggatatgatcttaaagggttcatctatggcacaaaaccgtgtcctacccaaactgatccagattttaatt |
40116384 |
T |
|
| Q |
507 |
actggacaagacaagatcaattgatcttgcacgctatcatcacatctgtcgattagagcatcataactgctcttggcaatgtgaaaacatctcaacaagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40116383 |
actggacaagacaagatcaattgatcttgcacgctatcatcacatctgtcgatcagagcatcataactgctcttggcaatgtgaaaacatctcaacaagc |
40116284 |
T |
|
| Q |
607 |
ttgggataccctcaagaaaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcgcctgtcttgtacaacaaagggctccaaatcagtt |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40116283 |
ttgggataccctcaagaaaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcgcctgtctcgtacaacaaagggctccaaatcagtt |
40116184 |
T |
|
| Q |
707 |
tctgaatacctacaaggtattaaatcaatctctgatgagcttgctgtcattaacaaacctgttgatgatgatgacttggttattcatgctctgaatgggc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40116183 |
tctgaatacctacaaggtattaaatcaatctctgatgagcttgctgtcatcaacaaacctgttgatgatgatgacttggttattcatgctctcaatgggc |
40116084 |
T |
|
| Q |
807 |
ttggatctgagtacaaagaagtttctgctgcccttcgtacgcgtgagaatcccatagcctttgctgagcttcatgatctacttgtggactatgaaaatgt |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
40116083 |
ttggatctgagtacaaagaagtttctgctgcccttcgtacgcgtgagaatcccatagcctttgttgagcttcatgatctacttatggactatgaaaatgt |
40115984 |
T |
|
| Q |
907 |
tctgcaacgtgatgatgaatctgctccagtacttactgcacatgctgcatacagaggtaacaaggctactttcaaacggggc |
988 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
40115983 |
tctgcaacgtgaagatgaatctgctccagtacttactgcacatgctgcatacagaggtaaacaagctacttccaaacggggc |
40115902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 40094173 - 40093987
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094173 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
40094074 |
T |
|
| Q |
108 |
tcatctctaactataaatagagaggctaatgaaacttatca-aataattcaaaaacatttcattatattctctattattctctatat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094073 |
tcatctctaactataaatagagaggctaataaaacttatcagaataattcaaaaacatttcattatattctctattattctctatat |
40093987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 19990799 - 19990613
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19990799 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacactacatgtatagatgaagaatataattgctctttaatgtattcgg |
19990700 |
T |
|
| Q |
108 |
tcatctctaactataaatagagaggctaatgaaacttatc-aaataattcaaaaacatttcattatattctctattattctctatat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19990699 |
tcatctctaactataaatagagaggctaatgaaacttatcaaaataattcaaaaacatttcattatattctctattattctctatat |
19990613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 19292545 - 19292371
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||| | | ||||||||| ||||||| |
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|
| T |
19292545 |
tgtttgactatagttatttacattgatgtatattttattatttgtcttacgtacagtacatgtatagctgaagcatatcaatactctttaatatattcgg |
19292446 |
T |
|
| Q |
108 |
tcatctctaactataaatagagaggctaatgaaacttatcaa-ataattcaaaaacatttcattatattctctat |
181 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |||| | ||||||||| |||||||||||| ||||||| |
|
|
| T |
19292445 |
tcatctctatccataaatagagaggctaatgaaacttctcaatacaattcaaaatcatttcattatactctctat |
19292371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 19298471 - 19298302
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| |||| |||| |||||||||||| ||||| |||| | | ||||||||||||||| | |
|
|
| T |
19298471 |
tgtttgactatagatatttacattgatgtatattttattaattgcctta-----ggtacatgtatagctgaagcatattaatactctttaatgtattcag |
19298377 |
T |
|
| Q |
108 |
tcatctctaactataaatagagaggctaatgaaacttatcaa-ataattcaaaaacatttcattatattctctat |
181 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |||| | ||||||||| |||||||||||| ||||||| |
|
|
| T |
19298376 |
tcatctctatccataaatagagaggctaatgaaacttctcaatacaattcaaaatcatttcattatactctctat |
19298302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 26103457 - 26103275
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctttaatgtattcgg |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26103457 |
tgtttgactatagttatttacattgatatacattttattcattgtcttatgtatagtacatgtatagatgaa---tataattgctctttaatgtattcgg |
26103361 |
T |
|
| Q |
108 |
tcatctctaactataaatagagaggctaatgaaacttatcaa-ataattcaaaaacatttcattatattctctattattctctata |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26103360 |
tcatctctaactataaatagagaggctaatgaaacttatcaacataattcaaaaacatttcattatattctctattattctctata |
26103275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 6407757 - 6407844
Alignment:
| Q |
8 |
tgtttgactatagttatttacattgatgtacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctt |
95 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407757 |
tgtttgactatagttatttacattgatatacattttattcattgtcttatgtacagtacatgtatagatgaagaatataattgctctt |
6407844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 6407844 - 6407915
Alignment:
| Q |
121 |
taaatagagaggctaatgaaacttatcaaataattcaaaaacatttcattatattctctattattctctata |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407844 |
taaatagagaggctaatgaaacttatcaaataattcaaaaacatttcattatattctctattattctctata |
6407915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 416 - 633
Target Start/End: Complemental strand, 9039499 - 9039282
Alignment:
| Q |
416 |
caaatgaatgctcttttcattggatatgatcttaaagggttcattgatggcacaaaaccgtgtcctacccaaactgatccagattttaattactggacaa |
515 |
Q |
| |
|
||||||||||| || |||||||||||||| || | ||| || || |||| |||||| ||| ||| || |||| |||||||||| || |||||||||| |
|
|
| T |
9039499 |
caaatgaatgcactattcattggatatgacctcacaggttttatcaatggtacaaaattgtgccctgccaaaacagatccagattacaactactggacaa |
9039400 |
T |
|
| Q |
516 |
gacaagatcaattgatcttgcacgctatcatcacatctgtcgattagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggatac |
615 |
Q |
| |
|
|||| || ||| | || | || ||||| ||||||||||||||| | |||||||| || | | |||||||| ||| | || ||||||||||||||||| |
|
|
| T |
9039399 |
gacaggaccaactcatactacatgctattatcacatctgtcgatcatagcatcatcacgacattaggcaatgtcaaatcctcccaacaagcttgggatac |
9039300 |
T |
|
| Q |
616 |
cctcaagaaaatgtttgc |
633 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
9039299 |
tctcaagaagatgtttgc |
9039282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 608 - 883
Target Start/End: Original strand, 3016353 - 3016628
Alignment:
| Q |
608 |
tgggataccctcaagaaaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcgcctgtcttgtacaacaaagggctccaaatcagttt |
707 |
Q |
| |
|
||||||| ||| || ||||||||||| ||||| || ||| | ||||||||||||||||| ||||| | || | || | || || |||||||| || | |
|
|
| T |
3016353 |
tgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcggttaactcgaacctctaaaggttccaaatccgtct |
3016452 |
T |
|
| Q |
708 |
ctgaatacctacaaggtattaaatcaatctctgatgagcttgctgtcattaacaaacctgttgatgatgatgacttggttattcatgctctgaatgggct |
807 |
Q |
| |
|
|||||||||| |||| || ||| |||| |||||||| ||||| |||| ||||| ||| ||||||||||||| | || |||||||||| ||||| || |
|
|
| T |
3016453 |
ctgaatacctccaagccatcaaagcaatttctgatgaacttgcaatcatcaacaagcctattgatgatgatgatctcgtgattcatgctcccaatggcct |
3016552 |
T |
|
| Q |
808 |
tggatctgagtacaaagaagtttctgctgcccttcgtacgcgtgagaatcccatagcctttgctgagcttcatgat |
883 |
Q |
| |
|
||| || |||| |||||| | |||| |||||| | || || |||||| |||| || |||| ||| ||||||||| |
|
|
| T |
3016553 |
tgggtccgagttcaaagagatcgctgcagcccttagaactcgggagaatgccatcgcatttgatgaacttcatgat |
3016628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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