View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821-Insertion-5 (Length: 954)
Name: NF4821-Insertion-5
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 346 - 954
Target Start/End: Original strand, 15381183 - 15381804
Alignment:
| Q |
346 |
ggtttttggagcctttttcctgtgtgatgtgtattgaattcattaatagcaattataaattttatgatatatatc---ttttcacatatctcctttactt |
442 |
Q |
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| T |
15381183 |
ggtttttggagcctttttcctgtgtgatgtgtattgaattcattaatagcaattataaattttattatatcttttcagttttcacatatctactttactt |
15381282 |
T |
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| Q |
443 |
tcattcattttatatatcagcttcttaattgacccttgaatgaattctgctcttgatgaaatctatgcatgaatcttataaaggattcagtcatggttga |
542 |
Q |
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| T |
15381283 |
tctttcattctatatatcagcttcttaattgacccttgaatgaattctgctcatgatgaaatctatgcatgaatcttataaaggattcagtcatggttga |
15381382 |
T |
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| Q |
543 |
tccaaatacaatgtttcataactagatacgacatccatgtttggaatcacgatgagttggatgaaaccacttttacactgtaaatagtaattcatcaaaa |
642 |
Q |
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| T |
15381383 |
tccaaatacaatgtttcataactagatatgacatccatgtttaaaatcacgatgagtttgatgaaaccacttttacactgtaaacagtaattcatcaaaa |
15381482 |
T |
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| Q |
643 |
cgcgtaacttttgtcgatgttaatta----------atgtgtctatcgaacttatag-tcaatccagacattatagatttttcatttgtttttcttatac |
731 |
Q |
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| T |
15381483 |
cgcgtaacttttgtcgatgttaattatgataacataatgtgtctatcgaacttataggtcaatccaaacattatagatttttcatttgtttttattatac |
15381582 |
T |
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| Q |
732 |
tgaattgaaaataaacttttaaggccatatatattctggagtgtagtgaggcataactgttaagttgatgcactcctttggtccctccaacaataaagaa |
831 |
Q |
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| T |
15381583 |
tgaattgaaaataaacttttaatgccatatatattcaggagtgtagtgaggcataactgttaagttgatgcactcc-ttggtccctccagcaataaagaa |
15381681 |
T |
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| Q |
832 |
ggtactatcaattatcattgactatgactcttcaaataaccagtttcctgctcgtgaccatctccagggctgttctattatatccttatactacatcact |
931 |
Q |
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| T |
15381682 |
ggtactatcaattatcattgactatgactcttcaaataaccag-ttcctgctcgtgaccatctcca-ggctgttctattatatccttatactacatcact |
15381779 |
T |
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| Q |
932 |
tg-cccctg-aatttccgacagtct |
954 |
Q |
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| T |
15381780 |
tgccccctgaaatttccgacagtct |
15381804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 15380831 - 15380961
Alignment:
| Q |
10 |
gctttcttctttcaacttgcacaagtcactttgatgggatcccacagttnnnnnnnntgttactagtagtaagttgaagctagctgcattgtgtggactt |
109 |
Q |
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| T |
15380831 |
gctttcttctttcaacttgcacaagtcactttgatgggatcccacagttaaaaaaaatgttactggtagtaagttgaagctagctgcattgtgtggactt |
15380930 |
T |
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| Q |
110 |
ttggagtgtgcaatgcacgtgagtatgtgtg |
140 |
Q |
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| T |
15380931 |
ttggagtgtgcaatgcacgtgagtatgtgtg |
15380961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 15381025 - 15381086
Alignment:
| Q |
204 |
cctaactatacaggacccattatctggtgtccaacgtgtgtgatggaaacacgtatctatag |
265 |
Q |
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| T |
15381025 |
cctaactatacaggacccattatctggtgtccaacgtgtgtggtggaaacacgtatctatag |
15381086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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