View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4821-Insertion-6 (Length: 803)

Name: NF4821-Insertion-6
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4821-Insertion-6
NF4821-Insertion-6
[»] chr5 (5 HSPs)
chr5 (7-803)||(32795500-32796290)
chr5 (7-702)||(19670138-19670835)
chr5 (698-801)||(19667964-19668067)
chr5 (96-203)||(32796346-32796453)
chr5 (77-175)||(26896578-26896676)
[»] chr1 (6 HSPs)
chr1 (58-803)||(22827041-22827793)
chr1 (58-183)||(22840959-22841084)
chr1 (58-158)||(22826646-22826746)
chr1 (15-113)||(20260917-20261014)
chr1 (77-165)||(24272755-24272843)
chr1 (7-43)||(26207073-26207109)
[»] chr6 (16 HSPs)
chr6 (77-800)||(2921875-2922605)
chr6 (7-720)||(11678290-11679001)
chr6 (58-476)||(27340619-27341043)
chr6 (58-476)||(27401359-27401783)
chr6 (472-632)||(27413719-27413879)
chr6 (664-803)||(27413893-27414033)
chr6 (78-183)||(13558009-13558114)
chr6 (58-180)||(2923172-2923295)
chr6 (58-159)||(13556018-13556119)
chr6 (77-168)||(16403529-16403619)
chr6 (58-165)||(11677130-11677237)
chr6 (74-141)||(22879999-22880066)
chr6 (77-171)||(16910129-16910223)
chr6 (155-202)||(11676986-11677033)
chr6 (74-141)||(22898114-22898181)
chr6 (77-187)||(14721695-14721804)
[»] scaffold0003 (2 HSPs)
scaffold0003 (472-632)||(79246-79406)
scaffold0003 (664-803)||(79092-79232)
[»] scaffold0065 (1 HSPs)
scaffold0065 (7-237)||(34631-34859)
[»] chr7 (7 HSPs)
chr7 (58-191)||(11269939-11270072)
chr7 (58-183)||(7961767-7961892)
chr7 (7-103)||(11269767-11269862)
chr7 (58-113)||(36208004-36208059)
chr7 (116-186)||(1103145-1103215)
chr7 (58-103)||(11280342-11280387)
chr7 (149-198)||(40279382-40279430)
[»] chr3 (5 HSPs)
chr3 (77-191)||(25889606-25889720)
chr3 (58-187)||(30046404-30046534)
chr3 (58-169)||(37133785-37133896)
chr3 (146-198)||(25578998-25579051)
chr3 (94-167)||(31141410-31141483)
[»] chr4 (7 HSPs)
chr4 (58-171)||(27272573-27272687)
chr4 (58-187)||(53472556-53472683)
chr4 (44-191)||(50887399-50887545)
chr4 (64-187)||(53469673-53469796)
chr4 (77-164)||(10395972-10396059)
chr4 (77-169)||(32015167-32015259)
chr4 (77-187)||(29235155-29235265)
[»] chr2 (4 HSPs)
chr2 (58-187)||(8761186-8761316)
chr2 (80-187)||(37965516-37965624)
chr2 (90-178)||(10128496-10128584)
chr2 (122-183)||(15140798-15140859)
[»] scaffold0007 (1 HSPs)
scaffold0007 (92-165)||(260213-260286)
[»] chr8 (1 HSPs)
chr8 (77-133)||(42001908-42001964)


Alignment Details
Target: chr5 (Bit Score: 675; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 7 - 803
Target Start/End: Original strand, 32795500 - 32796290
Alignment:
7 agaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaa 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||||||||||||||||||||||||| |||    
32795500 agaaaggaattgtataatttaattaataattacatatt-acat------gatagtagaggtaacgttagttatagcaaaacccactaactattggtacaa 32795592  T
107 gtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatatcct 206  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
32795593 gtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttcttcatattatccgatgtgggacattttctcattattattgatatcct 32795692  T
207 cccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
32795693 cccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaagcaggggtttggttagaatatcagcaagttgatc 32795792  T
307 attggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgttccgtccgagagtgaaataca 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
32795793 attggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcatccgagagtgaaataca 32795892  T
407 ggattagcgctaaggtgg-tagccccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccata 505  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32795893 ggattagcgctaagatgggtagcaccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccata 32795992  T
506 gcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtgct 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||    
32795993 gcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagaccgagcaacaaaacgttgttttcaagagctccaagagatgggtgtgct 32796092  T
606 gccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctcatcgcatccgagtaggcgtggagatttagtggggctgtcgtcga 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
32796093 gccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctcactgcatccgagtaggcgtggagatttagtggggctgtcgtcga 32796192  T
706 gatgaagacgcctttgtcacaggaacccgccaagtgtctgagcactcttttaagtgcagtccaatgcgccgttctgggattctgcatgaattgggcga 803  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
32796193 gatgaagacgcctttgttacaggaacccgccaagcatctgagcactcttttgagtgcagtccaatgcgctgttctgggattctgcatgaattgggcga 32796290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 702
Target Start/End: Complemental strand, 19670835 - 19670138
Alignment:
7 agaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaa 106  Q
    |||||||||||||||||| ||||||||||||||| ||  || |||| |   |||||||||||||| ||| |||||||||||||||||||||||||| |||    
19670835 agaaaggaattgtataatgtaattaataattacagatc-acgtatactgaatagtagaggtaacgctagctatagcaaaacccactaactattggtacaa 19670737  T
107 gtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatatcct 206  Q
    |||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
19670736 gtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatcttatgtgagacattttctcattattattgatatcct 19670637  T
207 cccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatc 306  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| ||| ||||||||||    
19670636 cccgcaagttgtatggtctgaaagagagttgcaacttggacaataagtaatcgaacttaggatgaagcaggggtttggttagaatttcaacaagttgatc 19670537  T
307 attggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgttccgtccgagagtgaaataca 406  Q
    || |||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||||    
19670536 atcggtagaaacaaatgatactcgaaacttgccatgttgaacattttctcagacaaaatgataggttaaggctatatgtttcatccgagagtgaaataca 19670437  T
407 ggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccata 505  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
19670436 ggattaacactaaggtgggtagcaccgaggttgtcacaatagatgactggattggctgttggagtgtggccaagttcagtgaatagggaaaggacccata 19670337  T
506 gcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtgct 605  Q
    |||||||||||| ||||||||||||||||||||||| ||||| | || |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
19670336 gcagctcacttgtcgtgtcagccaaggctttatattttgcttttgtggaagatcgagcaacagaacgttgttttcgagagctccatgagatgggcgtgct 19670237  T
606 gccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctca--tcgcatccgagtaggcgtggagatttagtggggctgtcgt 702  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |   |||||||||||||||||||||||||||||||||||||||    
19670236 gccaagatataacagataactagtggtggagatataatcatccttgtcgcctaccaagtccgcatccgagtaggcgtggagatttagtggggctgtcgt 19670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 698 - 801
Target Start/End: Complemental strand, 19668067 - 19667964
Alignment:
698 gtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtgtctgagcactcttttaagtgcagtccaatgcgccgttctgggattctgcatgaatt 797  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||    
19668067 gtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtatctgagaactcttttgattgcggtccaatgcgccgttctgggattctgcatgaatt 19667968  T
798 gggc 801  Q
    ||||    
19667967 gggc 19667964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 32796346 - 32796453
Alignment:
96 tattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattatt 195  Q
    |||| ||||||| |||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacattttctcattatt 32796445  T
196 attgatat 203  Q
    ||||||||    
32796446 attgatat 32796453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 26896676 - 26896578
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 175  Q
    ||||||||||| || ||||||||  |||||| |||||  ||||||||    |||||| ||||| | ||| |||||||||||||||| |||| |||||||    
26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctccaatg 26896578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 58 - 803
Target Start/End: Original strand, 22827041 - 22827793
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||   ||||||||| |||||||| ||||||| || ||||||||||||    
22827041 tagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatt 22827140  T
158 tcttcatattatccaatgtgggacat-tttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 253  Q
    |||||||||||||| |||||||||||  |||   | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
22827141 tcttcatattatccgatgtgggacataattctaattattattattgatatcctcccgcaagttgtatggtctgaaagagagatgcaacttggacaataag 22827240  T
254 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacatttt 353  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||    
22827241 taatcaaacctaggacgaagcaggggtttggttagaatatcagcaagttgatcatcggtagaaacaaaggatactcgaaacttgccattttgaacatttt 22827340  T
354 ctctgacaaaatgataggctaaggctatatgttccgtccgagagtgaaatacaggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgac 452  Q
     || ||||||||| || | |||| ||||||||| | ||||||||||| ||||||||||||| ||||| | |||||| ||||||||||||||||| |||||    
22827341 atcagacaaaatggtaagttaagactatatgtttcatccgagagtgagatacaggattagcactaagttgggtagcaccgaggttgtcacaataaatgac 22827440  T
453 tggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttg 552  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||    
22827441 tggattggttgttggagtgtggccaagttcattgaatagggaaaggacccatagcagcacacttgtcgtgtcagccaaggctttatattctgcttctatg 22827540  T
553 aaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatccttgt 652  Q
     |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
22827541 gaagagcgagcaacaaaacgttgtttttgacagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatctttgt 22827640  T
653 cgccttctca--tcgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtgtctgagcac 750  Q
    ||| | | ||   |||||| ||||||||||||||||||| ||| || ||||| || ||||||| |||||||||||||||||||||||||| | |||||||    
22827641 cgcttgcccagtccgcatcagagtaggcgtggagatttaatggagcggtcgttgaaatgaagatgcctttgtcacaggaacccgccaagtatttgagcac 22827740  T
751 tcttttaagtgcagtccaatgcgccgttctgggattctgcatgaattgggcga 803  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||| ||||    
22827741 tcttttgagtgcagtccaatgcgccgttctggggttttgcatgaattgcgcga 22827793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 22841084 - 22840959
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||||  |||||| |||||||||||||||    
22841084 tagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatt 22840985  T
158 tcttcatattatccaatgtgggacat 183  Q
    |||||||||||||| |||||||||||    
22840984 tcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 22826646 - 22826746
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | ||| |||||||||| |||||||||||||||||||| |||||  ||||| ||| |||||||| ||||||| ||||||||||| |||    
22826646 tagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagatt 22826745  T
158 t 158  Q
    |    
22826746 t 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 20260917 - 20261014
Alignment:
15 attgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 113  Q
    |||||||||| ||||||||||||||| ||| ||||||| |   |||||||||||||| ||||||||||||||  || || |||||| |||||| |||||    
20260917 attgtataatgtaattaataattacagatt-acatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattgatgcaagaaatac 20261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 24272843 - 24272755
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 165  Q
    ||||| ||||| ||||||||||||||||||| |||||  ||||||||| | |||||  ||||    ||| |||||||||||||||||||    
24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 26207073 - 26207109
Alignment:
7 agaaaggaattgtataatttaattaataattacatat 43  Q
    |||||||||||||||||| ||||||||||||||||||    
26207073 agaaaggaattgtataatgtaattaataattacatat 26207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 77 - 800
Target Start/End: Original strand, 2921875 - 2922605
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 176  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||| |||| || ||| | ||||||||||||||||||||||| ||||    
2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgt 2921974  T
177 gggacat-tttctcattatta---ttgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaa 272  Q
    | |||||   ||| |||||||   |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||    
2921975 gagacataaatctaattattattgttgatatcctcctgcaagttgtatggtctgaaagagagatgcaacttggacagtaagtaatcgaacctagaatgaa 2922074  T
273 gcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggc 372  Q
    | |||||||||| ||||||||||  ||||||||||| | ||||||||||||||||| ||||| | |||| ||| |||||||||| |||||||||||||||    
2922075 gtaggggtttggttagaatatcaataagttgatcatcgttagaaacaaaggatactcgaaacattccattttgtacattttctcggacaaaatgataggc 2922174  T
373 taaggctatatgttccgtccgagagtgaaatacaggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgactggattggttgttggagtg 471  Q
    |||||||||||||| | ||| | |||||||||| |||||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |    
2922175 taaggctatatgtttcatccaaaagtgaaatactggattagcactaaggtgggtagcactgaggttgtcacaatagatgactggattggctgttggaggg 2922274  T
472 tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac 571  Q
    || ||||||||| |||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||| ||||||| || |||| | ||||||| |||    
2922275 tgaccaagttcattgaatagggaaaggacccatagaagctcactctccgtgttagccaaggctttatattttgcttctatggaagagcaagcaacagaac 2922374  T
572 gttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctca-tc-gcatc 669  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | | || || ||||     
2922375 gttgttttcgagagctctaagagatgggtgtgctgccaagatataacagataactagtggtggagatataatcatccatgtcgcttgcccagtctgcatt 2922474  T
670 cgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgccaagtgtctgagcactcttttaagtgcagtccaa 769  Q
     |||||||| |||||||||| |||||| |||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||    
2922475 tgagtaggcatggagatttaatggggcggtcgtcgaaatgaagacgcctttgtcataggaacctgccaagtatctgagcactcttttgagtgcagtccaa 2922574  T
770 tgcgccgttctgggattctgcatgaattggg 800  Q
    ||||||||| |||| || |||||||||||||    
2922575 tgcgccgttatggggttttgcatgaattggg 2922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 720
Target Start/End: Complemental strand, 11679001 - 11678290
Alignment:
7 agaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaa 106  Q
    |||||||||||| ||||| ||||| |||| |||||||| ||| ||| |   |||||||||||| | ||  |||||||||| ||||||    ||||||  |    
11679001 agaaaggaattgaataatgtaattgataaatacatatt-acaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----ttggtgtta 11678907  T
107 gtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatatcct 206  Q
    | |||||  |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
11678906 gaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacattttctcattattattgatatcct 11678807  T
207 cccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatc 306  Q
    |||||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||||    
11678806 cccgcaagttgtatggtttgaaagagagatgcaacttggacaataagtaatagaacctaggacaaaacagggatttggttagaatatcagcaagttgatc 11678707  T
307 attggtagaaacaaaggatacttgaaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgttccgtccgagagtgaaataca 406  Q
    || || ||||| |||||||| | |||||||||||||||| ||||||| || |||||||||||||||||||||||||| || | ||||||||| |||||||    
11678706 atcggcagaaagaaaggatagtcgaaacttgccatgttgaacattttttcggacaaaatgataggctaaggctatatatttcatccgagagtaaaataca 11678607  T
407 ggattagcgctaaggt-ggtagccccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccata 505  Q
    |||||| | ||||||| ||||||  |||||||| |||||||||||  |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
11678606 ggattaacactaaggtaggtagcatcgaggttgccacaatagatgtttggaatggctgttggagtgtggccaagttcagtgaataaggaaaggacccata 11678507  T
506 gcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtgct 605  Q
     ||||||||| | | ||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||    
11678506 tcagctcactcgtcatgtcagctaaggctttatactctgcttctgtggaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggtgtgct 11678407  T
606 gccaagatataacagataaccagtggtggagatataatcatccttgtcgccttctca-tc-gcatccgagtaggcgtggagatttagtggggctgtcgtc 703  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||| | | || || ||||| ||||||||||||| ||||||||||||||||||     
11678406 gccaagatataacagataactagtggtggagatataatcatccttaccgcatgcccagtctgcatctgagtaggcgtggatatttagtggggctgtcgtt 11678307  T
704 gagatgaagacgccttt 720  Q
    |||||||||| ||||||    
11678306 gagatgaagaagccttt 11678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 58 - 476
Target Start/End: Original strand, 27340619 - 27341043
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
27340619 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27340716  T
158 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 253  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||||||    
27340717 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgcaa-ttgtatggtttgagagagagatgcaacttggacagtaag 27340815  T
254 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacatttt 353  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| | | |||||||    
27340816 tactcgaacctaggatgaagcaggggtttggttagaatatcagcaagttgatcatcgatagaaacaaaggatactcgaaacttgccatttcgaacatttt 27340915  T
354 ctctgacaaaatgataggctaaggctatatgttccgtccgagagtgaaatacaggattagcgctaaggtg-----gtagccccgaggttgtcacaataga 448  Q
    ||| || |||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||     ||||| |||||||||||||||||||    
27340916 ctcggaaaaaatgataggctaaggctatatgtttcatccgagagtgaaatacagaattagcactaaggtgggtacgtagcaccgaggttgtcacaataga 27341015  T
449 tgactggattggttgttggagtgtggcc 476  Q
    |||||||||||| || ||||||||||||    
27341016 tgactggattggatggtggagtgtggcc 27341043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 58 - 476
Target Start/End: Original strand, 27401359 - 27401783
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
27401359 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27401456  T
158 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 253  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||||||    
27401457 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgcaa-ttgtatggtttgagagagagatgcaacttggacagtaag 27401555  T
254 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccatgttggacatttt 353  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| | | |||||||    
27401556 tactcgaacctaggatgaagcaggggtttggttagaatatcagcaagttgatcatcgatagaaacaaaggatactcgaaacttgccatttcgaacatttt 27401655  T
354 ctctgacaaaatgataggctaaggctatatgttccgtccgagagtgaaatacaggattagcgctaaggtg-----gtagccccgaggttgtcacaataga 448  Q
    ||| || |||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||     ||||| |||||||||||||||||||    
27401656 ctcggaaaaaatgataggctaaggctatatgtttcatccgagagtgaaatacagaattagcactaaggtgggtacgtagcaccgaggttgtcacaataga 27401755  T
449 tgactggattggttgttggagtgtggcc 476  Q
    |||||||||||| || ||||||||||||    
27401756 tgactggattggatggtggagtgtggcc 27401783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 472 - 632
Target Start/End: Original strand, 27413719 - 27413879
Alignment:
472 tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac 571  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |  |||| ||||||||| |||    
27413719 tggccaaatttagtgaatagggaaaggacccataacagctcactcgccgtgtcagccaaggctttatattctgcttctgtagaagagcgagcaacagaac 27413818  T
572 gttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggt 632  Q
     ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
27413819 attgttttagagagctccaagagatgggcgtgctgccaagatataatagataaccagtggt 27413879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 664 - 803
Target Start/End: Original strand, 27413893 - 27414033
Alignment:
664 cgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgcc-aagtgtctgagcactcttttaagtgc 762  Q
    |||||| |||||||| |||||||||| |||| | |||||||| |||||||| ||||||||||||||||||||| |||| |  |||||||||||| |||||    
27413893 cgcatctgagtaggcatggagatttaatgggtcggtcgtcgaaatgaagacacctttgtcacaggaacccgccaaagtataggagcactcttttgagtgc 27413992  T
763 agtccaatgcgccgttctgggattctgcatgaattgggcga 803  Q
    |||||||| | |||||||||  || ||||||||||||||||    
27413993 agtccaatacaccgttctggagttttgcatgaattgggcga 27414033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 13558009 - 13558114
Alignment:
78 atagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtg 177  Q
    ||||||||| |||||||||||||||||| | |||||  ||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtg 13558108  T
178 ggacat 183  Q
    ||||||    
13558109 ggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 2923172 - 2923295
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcc-tttgcatat 156  Q
    ||||||| ||||  |||| |||| ||| |||||||||||||| ||||||| | |||  |||||||||||||||||| ||||||| ||||| |||||||||    
2923172 tagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatat 2923271  T
157 ttcttcatattatccaatgtggga 180  Q
    ||||||||||||||| ||||||||    
2923272 ttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 13556018 - 13556119
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||| |||||  ||||||||| |||||||| ||||||| |||||||||||||||    
13556018 tagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatt 13556117  T
158 tc 159  Q
    ||    
13556118 tc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 16403619 - 16403529
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatta 168  Q
    |||||||||| ||||||| ||||||||||| |||||   |||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
16403619 tatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 11677237 - 11677130
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    |||||||||||| | ||| ||||| ||||||| |||||||||||||  || |||||  |||||||||| ||||||| ||||||  || ||||||||||||    
11677237 tagtagaggtaatgctagctataggaaaacccgctaactattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatt 11677138  T
158 tcttcata 165  Q
    ||||||||    
11677137 tcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 22879999 - 22880066
Alignment:
74 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 141  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||| || |||||| |||||||    
22879999 agttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgac 22880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 16910129 - 16910223
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatcc 171  Q
    ||||||||||| ||| ||||||||| ||||  |||||  |||||||| ||||||||| |||   | ||| ||||||||||| |||||||||||||    
16910129 tatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatcc 16910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 11677033 - 11676986
Alignment:
155 atttcttcatattatccaatgtgggacattttctcattattattgata 202  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||||    
11677033 atttcttcatattatccgatgtgagacattttcaaattattattgata 11676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 22898114 - 22898181
Alignment:
74 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 141  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||| || || |||||| |||||||    
22898114 agttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgac 22898181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 14721804 - 14721695
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 176  Q
    |||| ||||||||| ||||||||| |||||| |||||  | | ||||| |||||||| ||| | | || | ||||||||||||||  |||| ||| ||||    
14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttataggccaaatc-tttgcatatttctttctattctccgatgt 14721706  T
177 gggacattttc 187  Q
    |||||||||||    
14721705 gggacattttc 14721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 113; Significance: 8e-57; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 472 - 632
Target Start/End: Complemental strand, 79406 - 79246
Alignment:
472 tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac 571  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |  |||| ||||||||| |||    
79406 tggccaaatttagtgaatagggaaaggacccataacagctcactcgccgtgtcagccaaggctttatattctgcttctgtagaagagcgagcaacagaac 79307  T
572 gttgttttcgagagctccaagagatgggcgtgctgccaagatataacagataaccagtggt 632  Q
     ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
79306 attgttttagagagctccaagagatgggcgtgctgccaagatataatagataaccagtggt 79246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 664 - 803
Target Start/End: Complemental strand, 79232 - 79092
Alignment:
664 cgcatccgagtaggcgtggagatttagtggggctgtcgtcgagatgaagacgcctttgtcacaggaacccgcc-aagtgtctgagcactcttttaagtgc 762  Q
    |||||| |||||||| |||||||||| |||| | |||||||| |||||||| ||||||||||||||||||||| |||| |  |||||||||||| |||||    
79232 cgcatctgagtaggcatggagatttaatgggtcggtcgtcgaaatgaagacacctttgtcacaggaacccgccaaagtataggagcactcttttgagtgc 79133  T
763 agtccaatgcgccgttctgggattctgcatgaattgggcga 803  Q
    |||||||| | |||||||||  || ||||||||||||||||    
79132 agtccaatacaccgttctggagttttgcatgaattgggcga 79092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 34859 - 34631
Alignment:
7 agaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaa 106  Q
    ||||| ||||||||||||  |||| |||||||||  |||||| ||| ||  ||||||| ||||  |||| |||||||||||||||||||||||||||| |    
34859 agaaatgaattgtataatgaaattgataattacaagtttacaaatactaaatagtagaagtaatattagctatagcaaaacccactaactattggtgcta 34760  T
107 gtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatatcct 206  Q
     ||||||  |||||  ||||||||||| |||||||||||| ||| ||||||| || |||||||| |||||| ||||||||||||||||||||||||||||    
34759 ataatactaacaca--agacttttatttatatgactaagcattttcatatttttttatattatctaatgtgagacattttctcattattattgatatcct 34662  T
207 cccgcaagttgtattgtctgaaagagagatg 237  Q
    |||||||||||||| ||||||||||| ||||    
34661 cccgcaagttgtatggtctgaaagagtgatg 34631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 11270072 - 11269939
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| ||||||| || | |||  |||||    
11270072 tagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatt 11269973  T
158 tcttcatattatccaatgtgggacattttctcat 191  Q
    |||||||||||||| |||||||||||||||||||    
11269972 tcttcatattatccgatgtgggacattttctcat 11269939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 7961892 - 7961767
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| ||||||| || ||||||||||||    
7961892 tagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatt 7961793  T
158 tcttcatattatccaatgtgggacat 183  Q
    |||||||||||| | |||||||||||    
7961792 tcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 11269767 - 11269862
Alignment:
7 agaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtg 103  Q
    ||||| |||||||||||| ||||| ||||||||| ||| ||| ||| ||  |||||||||||||| ||| |||||||||||  ||||||||||||||    
11269767 agaaatgaattgtataatgtaattgataattacagatt-acagatactaactagtagaggtaacgctagctatagcaaaacttactaactattggtg 11269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 36208059 - 36208004
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 113  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    
36208059 tagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatac 36208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 1103215 - 1103145
Alignment:
116 acacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacatttt 186  Q
    ||||||||| |||||||| ||||| | ||| |||| |||||||||||||||||||| ||||||||| ||||    
1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttt 1103145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 11280387 - 11280342
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtg 103  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||    
11280387 tagtagaggtaacgctagctatagcaaaacctactaactattggtg 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 40279430 - 40279382
Alignment:
149 ttgcatatttcttcatattatccaatgtgggacattttctcattattatt 198  Q
    |||| |||||||||||| |||||||||||| ||||||||| |||||||||    
40279430 ttgcttatttcttcataatatccaatgtggaacattttct-attattatt 40279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 25889720 - 25889606
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 176  Q
    ||||||||||||||||||||||||||||||| |||||  ||| |||||||||||||| ||||||| || ||||||||||  ||||||| |||||| ||||    
25889720 tatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgt 25889621  T
177 gggacattttctcat 191  Q
    |||||||||||||||    
25889620 gggacattttctcat 25889606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 30046534 - 30046404
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcata-- 155  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||  ||||||||  |||||||| |||||   ||| |||||||||      
30046534 tagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatatt 30046436  T
156 tttcttcatattatccaatgtgggacattttc 187  Q
    ||| |||||||||||| || || |||||||||    
30046435 ttttttcatattatccgatatgagacattttc 30046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 37133785 - 37133896
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    |||||||| |||| |||||||||||||||  |||||||||||| || ||| |||||  | |||||||||||||||| ||| | ||||  ||| | |||||    
37133785 tagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatatt 37133884  T
158 tcttcatattat 169  Q
    | ||||||||||    
37133885 ttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 25578998 - 25579051
Alignment:
146 cctttgcatatttcttcatattatccaatgtgggacatt-ttctcattattatt 198  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||    
25578998 cctttgcatatttcttcatattatccgatgtgagacattattctaattattatt 25579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 31141483 - 31141410
Alignment:
94 actattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 167  Q
    |||||||||| ||| |||||  |||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||    
31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 27272687 - 27272573
Alignment:
58 tagtagaggtaacgttagttatagcaaaa-cccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatat 156  Q
    ||||||| |||| | ||| |||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||| ||||||| || |||||||||||    
27272687 tagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatat 27272588  T
157 ttcttcatattatcc 171  Q
    |||||||||||||||    
27272587 ttcttcatattatcc 27272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 53472556 - 53472683
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 157  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||  |||||||| ||||||||| ||||| | ||| |||||||||||    
53472556 tagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatggc-aagtctttgcatatt 53472653  T
158 tcttcatattatccaatgtgggacattttc 187  Q
    ||||| |||||||| |||||| ||||||||    
53472654 tcttcgtattatccgatgtggaacattttc 53472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 50887399 - 50887545
Alignment:
44 ttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgacta 143  Q
    ||||||||| ||  ||||||||||||   ||| ||||||||||||||||||||||| ||| ||| || ||| || |||||||| |||||| ||||| | |    
50887399 ttacatatactaaatagtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatttatatggcca 50887498  T
144 agcctttgcatatttcttcatattatccaatgtgggacattttctcat 191  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||||||    
50887499 agcctttgcatattt-ttcatattattcgatgcgggacattttctcat 50887545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 53469673 - 53469796
Alignment:
64 aggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttca 163  Q
    ||||||| || | ||||| |||| ||||||||||||| | |||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||    
53469673 aggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttca 53469772  T
164 tattatccaatgtgggacattttc 187  Q
    |||||||  |||| | ||||||||    
53469773 tattatctgatgtagaacattttc 53469796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 10396059 - 10395972
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcat 164  Q
    ||||||| |||||||||||||||| |||||| |||||  ||||||||| |||||||| ||||| |  || ||||||||||||||||||    
10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 32015259 - 32015167
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattat 169  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| || |||||| || |  | ||| |||||||||| ||||| ||||||    
32015259 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattat 32015167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 29235155 - 29235265
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaat-accgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 175  Q
    |||||||||||| || ||||||||||||||| ||| ||  ||||||||| | |||||| ||||| | ||| |||||||||||| ||||||| |||| |||    
29235155 tatagcaaaacc-acgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatataatccgatg 29235253  T
176 tgggacattttc 187  Q
    ||||| ||||||    
29235254 tgggatattttc 29235265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 8761186 - 8761316
Alignment:
58 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatga-ctaagcctttgcatat 156  Q
    |||||||| ||| | ||| |||| ||||| |||||||| ||||||||||| |||||  |||||||||||||||||| |||||| | |||  |||||||||    
8761186 tagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatat 8761285  T
157 ttcttcatattatccaatgtgggacattttc 187  Q
    ||||||||||||||  |||||||||||||||    
8761286 ttcttcatattatctgatgtgggacattttc 8761316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 37965516 - 37965624
Alignment:
80 agcaaaacccactaactattggtgcaagtaataccgacacacaa-gacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 178  Q
    ||||||||||| |||||||||||||||| |||||  |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||||||| |||||     
37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
179 gacattttc 187  Q
    |||||||||    
37965616 gacattttc 37965624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 10128584 - 10128496
Alignment:
90 actaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 178  Q
    |||||||||||||||||| |||||  |||||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| ||||||    
10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtgg 10128496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 15140859 - 15140798
Alignment:
122 aagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacat 183  Q
    |||||||||||| ||||||| ||  |||| ||||||||||||| ||| || |||||||||||    
15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacat 15140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 260213 - 260286
Alignment:
92 taactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 165  Q
    |||||||||||||||| |||||  |||||||||  ||||||| || |||||||| |||||||||||||||||||    
260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 42001964 - 42001908
Alignment:
77 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttatt 133  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
42001964 tatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatt 42001908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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