View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821-Insertion-7 (Length: 740)
Name: NF4821-Insertion-7
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 7 - 740
Target Start/End: Complemental strand, 34713250 - 34712529
Alignment:
| Q |
7 |
actttccttatcaaatttatgtgattcaagttttttgtgacttatttttgctagaacaaacaaattttcgtataactcacaaatatgttgtattgnnnnn |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34713250 |
actttccttatcaaatttatgtgattcaagttttttgtgacttatttttgctagaacaaacaaattttcgtataactcacaaatatgttgtattgaaaaa |
34713151 |
T |
|
| Q |
107 |
nnnnn-tgcagacttatattgtttacaccggcaatagtagaaaggacgaaacttcctcattgctccactgcaagaatcttctacaacaagttacagtaga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34713150 |
aaaaaatgcagacttatattgtttacaccggcaatagtagaaaggacgaaacttcctcattgctccactgcaagaatcttctacaacaagttacagtaga |
34713051 |
T |
|
| Q |
206 |
caggttacattttttagcaaagagttgttcaaaagttaagagtagtattttgaaaagaaggtttcaaaaatgagaaggagtatatacgtaaaaaggaggg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34713050 |
caggttacattttttagcaaagagttgttcaaaagttaagagtagtattttgaaaagaaggtttcaaaaatgagaaggagtatatacgtaaaaaggaggg |
34712951 |
T |
|
| Q |
306 |
tgtgaataaaagtggaggctcattgtttctttataactccatatgccgtgttttcaatagtctcacctctcttatgtattttatttttgaaccgtgagtt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712950 |
tgtgaataaaagtggaggctcattgtttctttataactccatatgttgtgttttcaatagtctcacctctcttatgtattttatttttgaaccgtgagtt |
34712851 |
T |
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| Q |
406 |
taaatatacatgttgatgatgttttcaagttccatttatgtaaatataagactttgcattaatgtattattagatcaaactttagttcacaatttttgca |
505 |
Q |
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| T |
34712850 |
taaatatacatgttgatgatgttttcaagttccattt-------------actttgcattaatgtattattagatcaaactttagttcacaatttttgca |
34712764 |
T |
|
| Q |
506 |
gtgaaccgaagtctataatttaccattacaaacgtagcttcaatggatttgtagctaagctcacaaaggcagaagccgacaaaatggttggtgtgtgtag |
605 |
Q |
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| T |
34712763 |
gtgaaccgaagtttataattcaccattacaaacgtagcttcaatggatttgtagctaagctcacaaaggcagaagccgacaaaatggctggtgtgtgtag |
34712664 |
T |
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| Q |
606 |
agactcaactttgcctattgaaaaagttatatatagcttttctacttaaatttatttatttttaattgtgaaaattgtcgtgtagaacttgatggggtgg |
705 |
Q |
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| T |
34712663 |
agactcaactttgcctattgaaaaagttatatatagcttttctacttaaatttatttatttttaattgtgaaaattgtcatgtagaacttgatggggtgg |
34712564 |
T |
|
| Q |
706 |
tgtccatctttcctgataaaaagatatctctactt |
740 |
Q |
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| T |
34712563 |
tgtccatctttcctgataaaaagagatctctactt |
34712529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 363 - 640
Target Start/End: Complemental strand, 29430990 - 29430708
Alignment:
| Q |
363 |
tagtctcacctctcttatgtattttatttttgaaccgtgagtttaaatata-catgttgatgatgttttcaagttccatttatgtaaatataagactttg |
461 |
Q |
| |
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||||||||||| |||||| |||||| ||||||||| || | |||||||||| || | ||| | ||||||||||||||||||| ||| ||||||| || | |
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| T |
29430990 |
tagtctcacctttcttatatattttctttttgaactgtaattttaaatataacacatggattacgttttcaagttccatttatataactataagatttag |
29430891 |
T |
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| Q |
462 |
cattaatgtattattagatcaaactttagttcacaatttttgcagt---gaaccgaagtctataatttaccattacaaacgtagcttcaatggatttgta |
558 |
Q |
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| T |
29430890 |
tagtaatgtataataagatcaaactttagtttacaatttttgcagtcaagaaccaaagtctataatccaccattacaaatgtagcttcaatgaatttgta |
29430791 |
T |
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| Q |
559 |
gctaagctcacaaaggcagaagccgacaaaatggttggtgtgtgtagagactcaactttgcctatt-gaaaaagttatatata |
640 |
Q |
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| T |
29430790 |
actaaactcacaaaggcagaagctgacaaaatggatggtgcgtgttaacactaaacttttcctattaaaaaaagttatatata |
29430708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 49095056 - 49095240
Alignment:
| Q |
123 |
attgtttacaccggcaatagtagaaaggacgaaacttcctcattgctccactgcaagaatcttctacaacaagttacagtagacaggttacatttttta- |
221 |
Q |
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| T |
49095056 |
attgtttacaccggcaatagtaaaaacgatgaaacttcttcattgctccact----------tctacgacaagttgctacaggcaggttacctttttttt |
49095145 |
T |
|
| Q |
222 |
gcaaagagttgttcaaaagttaagagtagtattttgaaaagaaggtttcaaaaatgagaaggagtatatacgtaaaaaggagggtgtgaataaaa |
316 |
Q |
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| T |
49095146 |
gcaaagtgttgtttagcagttatgagtagtattttgaaaacaagattttaggaataaaaaggagtatatgtgtcaaaaggagggtgtgaataaaa |
49095240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 129 - 313
Target Start/End: Original strand, 7692469 - 7692655
Alignment:
| Q |
129 |
tacaccggcaatagtagaaaggacgaaacttcctcattgctccactgcaagaatcttctacaacaagttacagtagacaggttacatttttta-gcaaag |
227 |
Q |
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||||||||||||| || ||| | ||||||| ||||| ||||||| ||| |||||||||| |||| |||| | ||||||||| |||||| |||||| |
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| T |
7692469 |
tacaccggcaataataaaaacggtaaaacttcttcattactccactacaaaaatcttctacggcaagctacaacaaacaggttactttttttttgcaaag |
7692568 |
T |
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| Q |
228 |
agttgttcaaaagttaagagtagtattttgaaaagaag-gtttcaaaaatgagaaggagtatatacgtaaaaaggagggtgtgaata |
313 |
Q |
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||||||| |||||||| ||||||||||||||||| ||| ||| | |||| | ||| |||||||| |||||||||||| |||||| |
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| T |
7692569 |
agttgtttaaaagttatgagtagtattttgaaaacaagatttttagaaataaaaagaagtatatattcaaaaaggagggtatgaata |
7692655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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