View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821-Insertion-8 (Length: 669)
Name: NF4821-Insertion-8
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821-Insertion-8 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 214 - 669
Target Start/End: Complemental strand, 10983075 - 10982621
Alignment:
| Q |
214 |
cataaagaaatagtatcgctgagcacttttaaaataatttgtgtagaaaaggataattgtgcaaatatttatgaattaaaccacctatttattacaaaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10983075 |
cataaagaaatagtatcgctgagcacttttaaaataatttgtatggaaaaggataattgtgcaaatatttatgaattaaaccacctatttattacaaaaa |
10982976 |
T |
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| Q |
314 |
caaataaattaaaggagcccaatttatccgaatcacaatttcaacaccattttattcataaattttattttatgagacaacaaaacaacttatgataagg |
413 |
Q |
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| T |
10982975 |
caaataaattaaaggagcccaatttatccgaatcacaatttcaccaccattttattcataaattttattttatgagacaacaaaacaacttatgataagg |
10982876 |
T |
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| Q |
414 |
gccaacaaaacccatatcatataaaaaagttatattatgttacttctaattctgcttccacaacttagccaacttattcaaagcgacaagggaacttcca |
513 |
Q |
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| T |
10982875 |
gccaacaaaacccatatcatata-aaaagttatattatgttacttctaattctgcttccacaactgagccaacttattcaaagcgacaagggaacttcca |
10982777 |
T |
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| Q |
514 |
ccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattctttaattcgatccc |
613 |
Q |
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| T |
10982776 |
ccttcttctcttgcctctttagcacttattttcatcttgaaaataatttgtctaatctctttccccttatcggagtccattaattccttaatttgatccc |
10982677 |
T |
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| Q |
614 |
ctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaacc |
669 |
Q |
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| T |
10982676 |
ctaactcggttccactcacaaacccgtcttttgaatccttcaattccaaagcaacc |
10982621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 463 - 669
Target Start/End: Complemental strand, 10968877 - 10968671
Alignment:
| Q |
463 |
ttctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataattt |
562 |
Q |
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|||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10968877 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
10968778 |
T |
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| Q |
563 |
gtctaatctctttccctttatcggagtccattaattctttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
662 |
Q |
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| T |
10968777 |
tcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
10968678 |
T |
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| Q |
663 |
agcaacc |
669 |
Q |
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| T |
10968677 |
agcaacc |
10968671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 665
Target Start/End: Complemental strand, 11080177 - 11079996
Alignment:
| Q |
484 |
aacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttat |
583 |
Q |
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||||| |||||| | ||||| ||| ||||||| || |||||| || |||||||||||||||||||| ||||| | | ||||| ||||||||| || | |
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| T |
11080177 |
aactttttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcacttattttcatcttcaaaattgtctctctaacctctttcccctttt |
11080078 |
T |
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| Q |
584 |
cggagtccattaattctttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagc |
665 |
Q |
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| T |
11080077 |
ctgattccatcaactccttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 665
Target Start/End: Complemental strand, 11003010 - 11002855
Alignment:
| Q |
510 |
tccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattctttaattcga |
609 |
Q |
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||||||| || || ||| ||| ||||||||| |||||||||| ||||| | | |||||||||||||||||| || || ||||| || || |||| || |
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| T |
11003010 |
tccacctcctccttttgcctccttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctc |
11002911 |
T |
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| Q |
610 |
tcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagc |
665 |
Q |
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| T |
11002910 |
tcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagc |
11002855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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