View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4821-Insertion-9 (Length: 400)
Name: NF4821-Insertion-9
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821-Insertion-9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 41280834 - 41280457
Alignment:
| Q |
7 |
aggaactgcttctattgcggtggcattggctgcatttgttgtggttttaccttctcaatcaacacatttgatagctaagatgcagaatttcattgggtca |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41280834 |
aggaactgcttctattgctgtggcattggctgcatttgttgtggttttaccttctcaatcaacacatttgatagctaaga----gaatttcattgggtca |
41280739 |
T |
|
| Q |
107 |
gattgtgttggtgtatgtgttggcttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280738 |
gattgtgttggtgtatgtgttggcttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaatt |
41280639 |
T |
|
| Q |
207 |
gcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcgttttctttcttgctatgtttagagacattaattacac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280638 |
gcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacac |
41280539 |
T |
|
| Q |
307 |
--nnnnnnnatgctcatatgtccatgctatgaaattgtttatattatattaatgtttgtattattcctctaaatacacacac |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280538 |
tttttttttatgctcatatgtccatgctatgaaattgtttatattatattaatgtttgtattattcctctaaatacacacac |
41280457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 38806444 - 38806483
Alignment:
| Q |
170 |
tattcatttggctgctagtactgctttaggtgtaattgct |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38806444 |
tattcatttggcagctagtactgctttatgtgtaattgct |
38806483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 34981887 - 34981782
Alignment:
| Q |
195 |
ttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcgttttctttcttgctatgtttagaga |
294 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
34981887 |
ttaggtgtaattgcttgtgtggttgcatt---tcttccttgccctccttttgcttgctaccaggtaattttatcattttctttcatgctatgtttcgaga |
34981791 |
T |
|
| Q |
295 |
cattaatta |
303 |
Q |
| |
|
||||||||| |
|
|
| T |
34981790 |
cattaatta |
34981782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 34981612 - 34981660
Alignment:
| Q |
165 |
catcctattcatttggctgctagtactgctttaggtgtaattgcttgtg |
213 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
34981612 |
catcttattcatttggcagctagtactcctttatgtgtaattgcttgtg |
34981660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 54185219 - 54185258
Alignment:
| Q |
170 |
tattcatttggctgctagtactgctttaggtgtaattgct |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
54185219 |
tattcatttggcagctagtactgctttatgtgtaattgct |
54185258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 46636669 - 46636708
Alignment:
| Q |
170 |
tattcatttggctgctagtactgctttaggtgtaattgct |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
46636669 |
tattcatttggcagctagtactgctttatgtgtaattgct |
46636708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 43514833 - 43514794
Alignment:
| Q |
170 |
tattcatttggctgctagtactgctttaggtgtaattgct |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
43514833 |
tattcatttggcagctagtactgctttatgtgtaattgct |
43514794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University