View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821_high_14 (Length: 219)
Name: NF4821_high_14
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 23067710 - 23067894
Alignment:
| Q |
18 |
aatacaccattgaatctgacgaattttgttcagtgtctctgtggtgagggtgaacccggcaatgagggtaggtatctcagcaaagaaaaagactatgatt |
117 |
Q |
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| T |
23067710 |
aatacaccaccgaatctgacgaatgttgttcggtgtctctgcggtgagggtgaacccggcgatgagggtaggtatctcagcaaagaaaaatactatgatt |
23067809 |
T |
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| Q |
118 |
cacaaatcacaataggttctcgagatcttcaactacaataaaaaatttcgattttagcatgcataaactatattggcagagaata |
202 |
Q |
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| T |
23067810 |
cacaaatcacaatagattctcgagatcttcaactacaataaacaatttcgattttagcatacataaattatattggcagagaata |
23067894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 25809696 - 25809533
Alignment:
| Q |
38 |
gaattttgttcagtgtctctgtggtgagggtgaacccggcaatgagggtaggtatctcagcaaagaaaaagactatgattcacaaatcacaataggttct |
137 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25809696 |
gaatgttgttcggtgtctctgcggtgagggtgaacccggcgatgagggtaggtatctcagcaaagaaaaagactatgattcacaaatcacaatagattct |
25809597 |
T |
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| Q |
138 |
cgagatcttcaactacaataaaaaatttcgattttagcatgcataaactatattggcagagaat |
201 |
Q |
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| T |
25809596 |
cgagatcttcaactacaataaacaatttcgattttagcatacataaactatattggcagagaat |
25809533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 28705447 - 28705631
Alignment:
| Q |
18 |
aatacaccattgaatctgacgaattttgttcagtgtctctgtggtgagggtgaacccggcaatgagggtaggtatctcagcaaagaaaaagactatgatt |
117 |
Q |
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||||||||| ||||| ||||||| |||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28705447 |
aatacaccaccgaatccgacgaatgttgttcggtgtctctacggtgagggtgaacttggcgatgagggtaggtatctcagcaaagaaaaagactatgatt |
28705546 |
T |
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| Q |
118 |
cacaaatcacaataggttctcgagatcttcaactacaataaaaaatttcgattttagcatgcataaactatattggcagagaata |
202 |
Q |
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||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28705547 |
cacaaatcacaatagattcttgaaatcttcaactacaataaacaatttcgattttagcatacataaactatattggcagagaata |
28705631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 26908656 - 26908807
Alignment:
| Q |
51 |
tgtctctgtggtgagggtgaacccggcaatgagggtaggtatctcagcaaagaaaaagactatgattcacaaatcacaataggttctcgagatcttcaac |
150 |
Q |
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|||||||| ||||||||||| ||| | |||||||||||||||||||||| |||||| ||| ||||||||||||| |||||| ||||||||||||||||| |
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| T |
26908656 |
tgtctctgctgtgagggtgaatccgacgatgagggtaggtatctcagcaatgaaaaatactctgattcacaaatcgcaatagattctcgagatcttcaac |
26908755 |
T |
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| Q |
151 |
tacaataaaaaatttcgattttagcatgcataaactatattggcagagaata |
202 |
Q |
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||||||||| |||||| |||||||||| || ||||||||||||||||||||| |
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| T |
26908756 |
tacaataaacaatttcaattttagcatacacaaactatattggcagagaata |
26908807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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