View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821_high_2 (Length: 335)
Name: NF4821_high_2
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 62 - 313
Target Start/End: Complemental strand, 15380458 - 15380210
Alignment:
| Q |
62 |
aagctcacaactctcatgcaatattgtagtaatgtgccccatgactcttaagtcaattatgaaactcaaaaaccttctataataaaattttgaggtttct |
161 |
Q |
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| T |
15380458 |
aagctcacaactcttatgcaatattgtagtaatgtgccccatgactct-aagtcaattatgaaactcaaaaaccttctataataaaattttgaggtttct |
15380360 |
T |
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| Q |
162 |
ggacaaacttggaccaccaccttatttattttaagnnnnnnnncttcctttattagtactactgttcannnnnnnnnngttcttttcattgggagtttga |
261 |
Q |
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| T |
15380359 |
ggacaaacttggaccaccaccttatttattttaag-tttttttcttcctttattagtactactgttca-tttttttttgttcttttcattgggagtttga |
15380262 |
T |
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| Q |
262 |
tcctttgtcatcatctacccacaaacagttatttaatttccttcttttatag |
313 |
Q |
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| T |
15380261 |
tcctttgtcatcatctacccacaaacagttatttaatttccttcttttatag |
15380210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15380519 - 15380483
Alignment:
| Q |
1 |
gcaaagccattgctgaatgactatacccaccaacaag |
37 |
Q |
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| T |
15380519 |
gcaaagccattgctgaatgactatacccaccaacaag |
15380483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 26435751 - 26435801
Alignment:
| Q |
262 |
tcctttgtcatcatctacccacaaacagttatttaatttccttcttttata |
312 |
Q |
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| T |
26435751 |
tcctttgtcaacatctacccagaaacagctatttaatttcctctttttata |
26435801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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