View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4821_low_12 (Length: 249)
Name: NF4821_low_12
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821_low_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 26490244 - 26490382
Alignment:
| Q |
111 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
26490244 |
agcctatgtttgaatgcccgtttgcacccttaaaagcacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttgactcttttagagaga |
26490343 |
T |
|
| Q |
211 |
agcaattcttgttgcttgaattgattctagccaacactc |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26490344 |
agcaattcttgttgctagaattgattctagccaacactc |
26490382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 26825005 - 26824867
Alignment:
| Q |
111 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26825005 |
agcctatgtttggatgcccgtctgcacccttaaaaacacgacaattcattccaaactcacttctaatatgctaaaaagatgtttggctcttttagtgaga |
26824906 |
T |
|
| Q |
211 |
agcaattcttgttgcttgaattgattctagccaacactc |
249 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
26824905 |
agcaattcttgttacttgaattgattctagccatcactc |
26824867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 26825137 - 26825042
Alignment:
| Q |
16 |
atagtttccttggaaattgagaaacaaaatttctcttcctcaaaatgagctaaaaa--tacctacaacccacaaatgtcattttctttctctccgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
26825137 |
atagtttccttggaaattgagaaacaaaatttctcttcctcaaaatgaactaaaaaagtacctacaacccccaaatgtcattttctttctttccgt |
26825042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 16124694 - 16124556
Alignment:
| Q |
111 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16124694 |
agcctatgtttggatgcccgtttgcacccttaaaagcacgataattcattccaaactcacttttaatgtgctaaaaagatgtttggctcttttagagaga |
16124595 |
T |
|
| Q |
211 |
agcaattcttgttgcttgaattgattctagccaacactc |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16124594 |
agcaattcttgttgctagaattgattctagccaacactc |
16124556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 29681208 - 29681346
Alignment:
| Q |
111 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||||||||||| | ||||||||||||| ||| |||||||||||||||| || ||||| |||| |
|
|
| T |
29681208 |
agcctatgtttggatgcctgtttgcaccctcaaaagcacggcaattcgcttaaaactcacttctattgtactaaaaagatgtttggatcatttagagaga |
29681307 |
T |
|
| Q |
211 |
agcaattcttgttgcttgaattgattctagccaacactc |
249 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29681308 |
agcaatttttgttgctagaattgattctagccaacactc |
29681346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 41626286 - 41626177
Alignment:
| Q |
112 |
gcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgagaa |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
41626286 |
gcctgtgtttggatgcccgtttgcacccttaaaagcacggcaatttattccaaactcacttctaatatgttaaaaagatgtttggctcttttagagagaa |
41626187 |
T |
|
| Q |
212 |
gcaattcttg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
41626186 |
gcaattcttg |
41626177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 30600588 - 30600451
Alignment:
| Q |
112 |
gcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgagaa |
211 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||||||||||| ||| |||||||||||||||| || ||||| ||||| |
|
|
| T |
30600588 |
gcctatgtttggatgtacgtttgcactcttaaaagcacggcaattcacttaaaactcacttctattgtactaaaaagatgtttggatcatttagagagaa |
30600489 |
T |
|
| Q |
212 |
gcaattcttgttgcttgaattgattctagccaacactc |
249 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
30600488 |
gcaattcttgttgctagaattgattctagccagcactc |
30600451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 33468758 - 33468623
Alignment:
| Q |
111 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||| ||||||| | ||||||||||||| ||| |||||||||| ||||| || |||| |||| |
|
|
| T |
33468758 |
agcctatgtttggatgcctgtttgcaccctcaaaagcacgacaattcacttaaaactcacttctattgtactaaaaagatttttggatcatttatagaga |
33468659 |
T |
|
| Q |
211 |
agcaattcttgttgcttgaattgattctagccaaca |
246 |
Q |
| |
|
||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
33468658 |
agccattcttgttgctagaatcgattctagccaaca |
33468623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 43730732 - 43730602
Alignment:
| Q |
111 |
agcctatgtttggatgcccgtttgcacccttaaaaacacggcaattcattccaaactcacttctaatgtgctaaaaagatgtttggctcttttagtgaga |
210 |
Q |
| |
|
||||||||||| |||| ||||||||| || |||| |||||||||||| | ||||||| ||||| ||| |||||||||||||||| || ||||| |||| |
|
|
| T |
43730732 |
agcctatgtttagatgtacgtttgcactctcaaaagcacggcaattcacttaaaactcatttctattgtactaaaaagatgtttggatcatttagagaga |
43730633 |
T |
|
| Q |
211 |
agcaattcttgttgcttgaattgattctagc |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
43730632 |
agcaattcttgttgctagaattgattctagc |
43730602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University