View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4821_low_13 (Length: 248)
Name: NF4821_low_13
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4821_low_13 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 11468949 - 11468723
Alignment:
| Q |
7 |
aagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
106 |
Q |
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| T |
11468949 |
aagacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
11468850 |
T |
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| Q |
107 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgc |
206 |
Q |
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| T |
11468849 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgc |
11468750 |
T |
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| Q |
207 |
tcaaatccatttatacaaacatgtata |
233 |
Q |
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||||||||||||||||||||||||||| |
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| T |
11468749 |
tcaaatccatttatacaaacatgtata |
11468723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 11522512 - 11522738
Alignment:
| Q |
7 |
aagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
106 |
Q |
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| T |
11522512 |
aagacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
11522611 |
T |
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| Q |
107 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgc |
206 |
Q |
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| T |
11522612 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgc |
11522711 |
T |
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| Q |
207 |
tcaaatccatttatacaaacatgtata |
233 |
Q |
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| T |
11522712 |
tcaaatccatttatacaaacatgtata |
11522738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 11445826 - 11445751
Alignment:
| Q |
158 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtata |
233 |
Q |
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||||||||| || |||||||| |||||||||| |||||| |||||||||||||||||| | ||||||||| |||| |
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| T |
11445826 |
aaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatata |
11445751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 11507033 - 11507108
Alignment:
| Q |
158 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtata |
233 |
Q |
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| T |
11507033 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatata |
11507108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 11547264 - 11547339
Alignment:
| Q |
158 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtata |
233 |
Q |
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||||||||| || |||||||| |||||||||| |||| | |||||||||||||||||| | ||||||||| |||| |
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| T |
11547264 |
aaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacatatata |
11547339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 34775649 - 34775699
Alignment:
| Q |
183 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtata |
233 |
Q |
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| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtata |
34775699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 34783870 - 34783920
Alignment:
| Q |
183 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtata |
233 |
Q |
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| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtata |
34783920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 1690 - 1765
Alignment:
| Q |
158 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtata |
233 |
Q |
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|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| |||| |
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| T |
1690 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatata |
1765 |
T |
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