View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4821_low_15 (Length: 237)

Name: NF4821_low_15
Description: NF4821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4821_low_15
NF4821_low_15
[»] chr8 (1 HSPs)
chr8 (5-200)||(26490400-26490610)
[»] chr4 (1 HSPs)
chr4 (53-199)||(26824653-26824799)
[»] chr7 (1 HSPs)
chr7 (5-203)||(41625921-41626133)
[»] chr6 (4 HSPs)
chr6 (5-147)||(16124381-16124538)
chr6 (134-203)||(29681477-29681545)
chr6 (149-203)||(16122726-16122780)
chr6 (10-58)||(29681369-29681417)
[»] chr5 (3 HSPs)
chr5 (10-58)||(33468549-33468597)
chr5 (53-102)||(33468490-33468539)
chr5 (151-203)||(33468421-33468473)
[»] chr1 (1 HSPs)
chr1 (10-58)||(43730523-43730571)
[»] chr2 (1 HSPs)
chr2 (10-58)||(30600380-30600428)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 26490400 - 26490610
Alignment:
Q  5 gttttagagaatcaattctaccataattttgatctctgatatatcttt---------------cttaattgcccatagactgataatcaaataaattcag 89  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||    
T  26490400 gtttttgagaatcaattctcccataattttgatctctgatatatcttttttaattgccttttacttaattgcccatagactgataatcaaataaattcag 26490499  T
Q  90 caactattgtcacgttgtttaaaagaaattaatgttttgctggtataatgcttattcgcatacacatgaattttgtaattaaactctactaattattttg 189  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  26490500 caactattgtcacgttgtttaaaagaaattaatgttccactggtataatgcttattggcatacacatgaattttgtaatttaactctagtaattattttg 26490599  T
Q  190 tggtcaaccaa 200  Q
    | |||||||||    
T  26490600 tagtcaaccaa 26490610  T

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Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 26824799 - 26824653
Alignment:
Q  53 cttaattgcccatagactgataatcaaataaattcagcaactattgtcacgttgtttaaaagaaattaatgttttgctggtataatgcttattcgcatac 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26824799 cttaattgcccatagactgataatcaaataaattccgcaactattgtgaggttgtttaaaagaaattaatgttttgctggtataatgcttattcgcatac 26824700  T
Q  153 acatgaattttgtaattaaactctactaattattttgtggtcaacca 199  Q
    || |||||||||||| | |||||||||||||||||||||||||||||    
T  26824699 acgtgaattttgtaacttaactctactaattattttgtggtcaacca 26824653  T

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Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 41626133 - 41625921
Alignment:
Q  5 gttttagagaatcaattctaccataattttgatctctgatatatctttcttaattg---------------cccatagactgataatcaaataaattcag 89  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||               |||||  | ||||||||||||||||||||    
T  41626133 gttttagagaatcaattctaccataattttgatcgctgatatatctttcttaattgtcttttacttaattgcccatccattgataatcaaataaattcag 41626034  T
Q  90 caactattgtcacgttgtttaaaagaaattaatgttttgctggtataatgcttattcgcatacacatgaattttgtaattaaactctactaattattttg 189  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  41626033 caactattgtcacgttgtttaaaagaaattaatgttttg-ttgtataatgcttattcgcatacacatgatttttgtaatttaactctactagttattttg 41625935  T
Q  190 tggtcaaccaacaa 203  Q
    | ||| ||||||||    
T  41625934 tagtcgaccaacaa 41625921  T

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Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 16124538 - 16124381
Alignment:
Q  5 gttttagagaatcaattctaccataattttgatctctgatatatctttcttaattgcc---------------catagactgataatcaaataaattcag 89  Q
    |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||               |||||||||||||||||||||||||||    
T  16124538 gttttagagaattagttctaccataattttgatctctgatatatcattcttaattgccttttacttaattgtccatagactgataatcaaataaattcag 16124439  T
Q  90 caactattgtcacgttgtttaaaagaaattaatgttttgctggtataatgcttattcg 147  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16124438 caactattgtcacgttgtttaaaagaaattaatgttttgctagtataatgcttattcg 16124381  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 29681477 - 29681545
Alignment:
Q  134 ataatgcttattcgcatacacatgaattttgtaattaaactctactaattattttgtggtcaaccaacaa 203  Q
    |||||||||||||||| |||||||||||||| |||  ||||||| |||||||||||| ||||||||||||    
T  29681477 ataatgcttattcgca-acacatgaattttgcaatataactctaataattattttgtagtcaaccaacaa 29681545  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 16122780 - 16122726
Alignment:
Q  149 atacacatgaattttgtaattaaactctactaattattttgtggtcaaccaacaa 203  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||| ||||||||    
T  16122780 atacacatgaatttcgtaatttaactctactaattattttgtagtcgaccaacaa 16122726  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 29681369 - 29681417
Alignment:
Q  10 agagaatcaattctaccataattttgatctctgatatatctttcttaat 58  Q
    |||| |||||||||||||||| | ||| |||| ||||||||||||||||    
T  29681369 agagtatcaattctaccataactgtgacctcttatatatctttcttaat 29681417  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 33468597 - 33468549
Alignment:
Q  10 agagaatcaattctaccataattttgatctctgatatatctttcttaat 58  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  33468597 agagaatcaattctaccataactttgacctctgatatatctttcttaat 33468549  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 33468539 - 33468490
Alignment:
Q  53 cttaattgcccatagactgataatcaaataaattcagcaactattgtcac 102  Q
    ||||||||||||| || |||||| ||||||||| |||||||| |||||||    
T  33468539 cttaattgcccattgattgataaccaaataaatccagcaactgttgtcac 33468490  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 33468473 - 33468421
Alignment:
Q  151 acacatgaattttgtaattaaactctactaattattttgtggtcaaccaacaa 203  Q
    |||||||||||||| |||  ||||||| |||||||||||| ||| ||||||||    
T  33468473 acacatgaattttgcaatataactctaataattattttgtagtctaccaacaa 33468421  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 43730571 - 43730523
Alignment:
Q  10 agagaatcaattctaccataattttgatctctgatatatctttcttaat 58  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  43730571 agagaatcaattctaccataactttgacctctgatatatctttcttaat 43730523  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 30600428 - 30600380
Alignment:
Q  10 agagaatcaattctaccataattttgatctctgatatatctttcttaat 58  Q
    |||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  30600428 agagaatcaattcttccataactttgacctctgatatatctttcttaat 30600380  T

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