View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822-Insertion-10 (Length: 351)
Name: NF4822-Insertion-10
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 3324866 - 3324549
Alignment:
| Q |
8 |
tcaatgccgatcagagattcaactgactcaagaattaagannnnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatgc |
107 |
Q |
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| T |
3324866 |
tcaatgccgatcagagattcaactgactcaagaattaagaaacttttttga-tgatctatatgatgtaagttttaccaagttcgaaacaatatcacatgc |
3324768 |
T |
|
| Q |
108 |
ttcacggatcttagaaatttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttcct |
207 |
Q |
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| T |
3324767 |
atcacgaatcttagaaatttcctggagatcgcttttgattggattaggaagttgcagcatggccatcaacactcttggcaagaacatatcacaggttcct |
3324668 |
T |
|
| Q |
208 |
tcgcattcttctctccttttctgatctttatgagaacatgggtcaattttccatttgcatttctttttctttaaagcaaaattttcaatagaagtgaaat |
307 |
Q |
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| T |
3324667 |
tcgcattcctctctccttttctgatctttatgagaacatgggtcaattttccatttgcatttctttttctttaaagcaaaattttcaatagaagtgaaat |
3324568 |
T |
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| Q |
308 |
gatgtttttcagataatta |
326 |
Q |
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| T |
3324567 |
gatgtttttaagataatta |
3324549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 3262380 - 3262296
Alignment:
| Q |
125 |
tttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttccttc |
209 |
Q |
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| T |
3262380 |
tttcctcgagatcgctattgattagaataggaagttgccacgtagtcatcaaaactcttggaaagagcatatcacaggttccttc |
3262296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 12598838 - 12598804
Alignment:
| Q |
171 |
catcaacactcttggcaagaacatatcacaggttc |
205 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
12598838 |
catcgacactcttggcaagaacatatcacaggttc |
12598804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 20812662 - 20812710
Alignment:
| Q |
59 |
atgatctatatgatgtaagttttaccaagttggaaacaatatcacatgc |
107 |
Q |
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| T |
20812662 |
atgatctatatgatgtgaattttactgagttggaaacaacatcacatgc |
20812710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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