View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822-Insertion-11 (Length: 317)
Name: NF4822-Insertion-11
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 11802918 - 11803217
Alignment:
| Q |
8 |
cattgttggcttgctacaggtataagatttatatagaaggatgggcttggtcagttagtgagaaatacattatggcatgtgattccatgacattatatgt |
107 |
Q |
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| T |
11802918 |
cattgttggcttgctacaggtataagatttatatagaaggatgggcttggtcagttagtgagaaatacattatggcatgtgattccatgacattatatgt |
11803017 |
T |
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| Q |
108 |
tagacccaatttctatgactttttcattagaggcatggatccattacaacactattggccaattagagataatagtaaatgcacttctcttaaatttgca |
207 |
Q |
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| T |
11803018 |
tagacccaatttctatgactttttcattagaggcatggatccattacaacactattggccaattagagataatagtaaatgcacttctcttaaatttgct |
11803117 |
T |
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| Q |
208 |
gtggattggggaaacaaacatgctgataaggtctctccctctcactccaacaacaaacatgcctttatttgattgtggacttgctagctatgaaacacga |
307 |
Q |
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| T |
11803118 |
gtggattggggaaacaaacatgccgataaggtctct--ctctcactccaacaacaaacatgactttatttgattgtggacttgctagttatgaaacacga |
11803215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 11810813 - 11811014
Alignment:
| Q |
23 |
acaggtataagatttatatagaaggatgggcttggtcagttagtgagaaatacattatggcatgtgattccatgacattatatgttagacccaatttcta |
122 |
Q |
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| T |
11810813 |
acaggtacaagatatacatagaaggatgggcttggtcagttagtgaaaaatacatcatggcatgtgattccatgacattatatgtaaagtctaattacca |
11810912 |
T |
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| Q |
123 |
tgactttttcattagaggcatggatccattacaacactattggccaattagagataatagtaaatgcacttctcttaaatttgcagtggattggggaaac |
222 |
Q |
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| T |
11810913 |
tgattttttcatcagaggcatggtgccattacaacattattggcctattagaaacaatagtaaatgcacctctcttaagtttgctgtggaatggggaaac |
11811012 |
T |
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| Q |
223 |
aa |
224 |
Q |
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| T |
11811013 |
aa |
11811014 |
T |
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