View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4822-Insertion-5 (Length: 732)
Name: NF4822-Insertion-5
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822-Insertion-5 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 694; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Complemental strand, 38121265 - 38120538
Alignment:
| Q |
8 |
accgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121265 |
accgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
38121166 |
T |
|
| Q |
108 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121165 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatt |
38121066 |
T |
|
| Q |
208 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121065 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctac |
38120966 |
T |
|
| Q |
308 |
tgtatcagattctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120965 |
tgtatcagattctgctggtcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtct |
38120866 |
T |
|
| Q |
408 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatg---atgaagattgtggttcagttcttt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
38120865 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttcttt |
38120766 |
T |
|
| Q |
505 |
ctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagctaattcacacggttgcttagttctttttagtt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38120765 |
ctctgctgaagtgaatctctatgaaatttgtagttaataagtttacactgttgtccatctaatgtagctaattcacacggttccttagttctttttagtt |
38120666 |
T |
|
| Q |
605 |
tgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatccaactacactatgttgcttaaatagttcttcaataa |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120665 |
tgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatccaactacactatgttgcttaaatagttcttcaataa |
38120566 |
T |
|
| Q |
705 |
aacaatttgtggatttagtctttacaga |
732 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38120565 |
aacaatttgtggatttagtctttacaga |
38120538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 38608858 - 38609400
Alignment:
| Q |
8 |
accgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
107 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608858 |
accgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
38608957 |
T |
|
| Q |
108 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38608958 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatt |
38609057 |
T |
|
| Q |
208 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||| | || |
|
|
| T |
38609058 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaac |
38609157 |
T |
|
| Q |
308 |
tgtatcagattctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtct |
407 |
Q |
| |
|
| ||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
38609158 |
tttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtct |
38609257 |
T |
|
| Q |
408 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
38609258 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctc |
38609357 |
T |
|
| Q |
508 |
tgctgaagtgaatctctatgaaatttgtagttaataagtttac |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609358 |
tgctgaagtgaatctctatgaaatttgtagttaataagtttac |
38609400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 38793641 - 38794183
Alignment:
| Q |
8 |
accgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
107 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793641 |
accgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
38793740 |
T |
|
| Q |
108 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38793741 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatt |
38793840 |
T |
|
| Q |
208 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||| | || |
|
|
| T |
38793841 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaac |
38793940 |
T |
|
| Q |
308 |
tgtatcagattctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtct |
407 |
Q |
| |
|
| ||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
38793941 |
tttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtct |
38794040 |
T |
|
| Q |
408 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
38794041 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctc |
38794140 |
T |
|
| Q |
508 |
tgctgaagtgaatctctatgaaatttgtagttaataagtttac |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794141 |
tgctgaagtgaatctctatgaaatttgtagttaataagtttac |
38794183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 396 - 506
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
396 |
gcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtg |
492 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
|
| Q |
493 |
gttcagttctttct |
506 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
34592944 |
gtttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 659
Target Start/End: Original strand, 34593022 - 34593078
Alignment:
| Q |
603 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcac |
659 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
34593022 |
tttgtgctgcacttctttatctgttgaagtcaaactttgaatttgtagttaattcac |
34593078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 603 - 660
Target Start/End: Original strand, 38609476 - 38609533
Alignment:
| Q |
603 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
660 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
38609476 |
tttgtgctgcgcttctttctccattgaagtgaaactttgaatttgtagttaattcaca |
38609533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 603 - 660
Target Start/End: Original strand, 38794259 - 38794316
Alignment:
| Q |
603 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
660 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
38794259 |
tttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcaca |
38794316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 38287457 - 38287498
Alignment:
| Q |
499 |
ttctttctctgctgaagtgaatctctatgaaatttgtagtta |
540 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
38287457 |
ttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Complemental strand, 28730839 - 28730120
Alignment:
| Q |
8 |
accgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730839 |
accgaatcgttacttgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttcc |
28730740 |
T |
|
| Q |
108 |
ggcggaggagtgacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatt |
207 |
Q |
| |
|
|| ||||||||||||| ||| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||| |||||||| || ||||||| |
|
|
| T |
28730739 |
ggtggaggagtgacattagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatt |
28730640 |
T |
|
| Q |
208 |
tgccttttccgcatatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28730639 |
tgccttttccgcatatcaatcctattgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctac |
28730540 |
T |
|
| Q |
308 |
tgtatcagattctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtct |
407 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28730539 |
tgtatcagattctgctggtcaggcgactgaagaaacctgctctgctcttgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtct |
28730440 |
T |
|
| Q |
408 |
cccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctc |
507 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || ||| |||| |||||||| | || | ||||||||| |
|
|
| T |
28730439 |
cccatgcctcaggtcaggccaatgtttgagattgaagatcaccatggcctgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctc |
28730340 |
T |
|
| Q |
508 |
tgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagctaattcacacggttgcttagttctttttagtttgt |
607 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28730339 |
tgctgaagtaaaactatatgaaatttgtagttaataagtttacaccgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgt |
28730240 |
T |
|
| Q |
608 |
gctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatcc--aactacactatgttgcttaaatagttcttcaataaa |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| | ||||| |
|
|
| T |
28730239 |
gctgcacttctttgtctcatgaagtgaaactctgaatttgtagttaattcacactattatccatatatactctatgttgcttaactagttcgttaataa- |
28730141 |
T |
|
| Q |
706 |
acaatttgtggatttagtctttacaga |
732 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28730140 |
------tgtggatttagtctttacaga |
28730120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 509
Target Start/End: Original strand, 33078483 - 33078557
Alignment:
| Q |
438 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtggttcagttctttctctg |
509 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg |
33078557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 621
Target Start/End: Complemental strand, 3928143 - 3928106
Alignment:
| Q |
584 |
gttgcttagttctttttagtttgtgctgcacttctttg |
621 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3928143 |
gttgcttagatctttttagtttgtgcagcacttctttg |
3928106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University