View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822-Insertion-7 (Length: 665)
Name: NF4822-Insertion-7
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 167 - 503
Target Start/End: Complemental strand, 36543579 - 36543243
Alignment:
| Q |
167 |
aaagacaagtattatgtagtaaccataatattgaaagtaaaatcactataatatagaaagttaaagaagagtatgctacaattgtatattccaagtaatt |
266 |
Q |
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| T |
36543579 |
aaagacaagtattatgtagtaaccataatattgaaagtaaaatcactataatatagaaagttaaagaagaatatgctacaattgtatattccaagtaatt |
36543480 |
T |
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| Q |
267 |
gttaagatatttttagtatatgtcacaattgtgctgcaattgtacttctatctatgaaacttcttgtggttacatgataagagaaccaaaatctttggca |
366 |
Q |
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| T |
36543479 |
gttaagatatttttagtatatgtcacaattgtgcaacaattgtacttctatctatgaaacttcttgtggttacatgataagagaaccaaaatctttggca |
36543380 |
T |
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| Q |
367 |
aataagctaagttcaacatcaagatttttccaactnnnnnnntatagcaaaagatcccatattaattcaatatccaaagataaaatagaaaatattttgt |
466 |
Q |
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| T |
36543379 |
aataagctaagttcaacatcaagatttttccaactaaaaaaatatagcaaaagatcccatattaattcaatatccaaagataaaatagaaaatattttgt |
36543280 |
T |
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| Q |
467 |
aaacaaagaaaaacgggcatgttattaaagagacatg |
503 |
Q |
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| T |
36543279 |
aaacaaagaaaaacgggcatgttattaaagagacatg |
36543243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 36543772 - 36543596
Alignment:
| Q |
8 |
aatacatgatacaatattcacaatcatgtgaaaaaagacatctagacgtacttgaggaaaattagtgaaaaaacacatttaattcaaacaattagaaatc |
107 |
Q |
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| T |
36543772 |
aatacatgatacaatattcacaatcatgtgaaataagacatatagacgtacttgaggaaaattagtgaaaaaacacatgaaattcaaacaattagaaatc |
36543673 |
T |
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| Q |
108 |
aggttagaatatttaatctttctacttaattggtttcaaagacatagtcatgttttaataaagacaagtattatgta |
184 |
Q |
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| T |
36543672 |
aggttaaaatatttaatctttctatttaattggtttcaaagacatagtcatgttttaataaagacaagtattatgta |
36543596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 587 - 665
Target Start/End: Complemental strand, 36543158 - 36543080
Alignment:
| Q |
587 |
caaattgcaagaagtttgaacattggtagaagaaaaagggaaataatataggagagtataaaagactattaaacccaag |
665 |
Q |
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| T |
36543158 |
caaattgcaagaagtttgaacattggtagaagaaaaagggaaataatataggagagtataaaagactattaaacccaag |
36543080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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