View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822-Insertion-8 (Length: 570)
Name: NF4822-Insertion-8
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822-Insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Original strand, 18563876 - 18564435
Alignment:
| Q |
8 |
tctgcctcacactaaagtgggaagtaaattcgtcacactattctctccaagagttgatagactcctcttcttgccctttaaccaagtcatggaggcacct |
107 |
Q |
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||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||| |
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| T |
18563876 |
tctgcctcatagtaaagtgggaagtaaattcgtcgcacaattctctccaagagttgatagaatcgtcttctttccctttaaccaagtaatggaggcacct |
18563975 |
T |
|
| Q |
108 |
tttagtgtcaacacaaacaacttgcacttcactgcgcctcgcacctggtggtaattgaggacggtatctaggtgttctatgtgctcgtccagatcggtgg |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
18563976 |
tttagtgtcaacacaaacaacttgcacttcaccgcgcctcccacctgatggtaattaaggatggtatctaggtgttctatgtgctcgtccggattaatgg |
18564075 |
T |
|
| Q |
208 |
tgccgtcataggtctccagcttcgacggctttgtgaaaacgcgagggataaggtattatgcaacctttctggtgaatggttcattgcgacagctcctatg |
307 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18564076 |
tgccgtcatagatctccagcttcgacggctttgcgaaaacgtgagggatagggtattatgcaacctttctggtgaatggtccattgcgacagctcctatg |
18564175 |
T |
|
| Q |
308 |
ctggtgttccaagaataatcctcctttcgaaaattatggtgtggagaagaattctttcctcagtggcggttcgaataggcttattatgacgaaaacgacg |
407 |
Q |
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| T |
18564176 |
ctggtgttccgagaataatcctcctttcgaaaattatggtgcgaagaagaattctttcctcagtggcggtttga--aggcttatcgtgatgaaaacgacg |
18564273 |
T |
|
| Q |
408 |
aggagacgataaagcctctagctagttttttatgatgttggcttgtttatcatgttatgttttaaattgaggatagtgggattgttgttgtcttagaata |
507 |
Q |
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| T |
18564274 |
aggagacgatgaagtctctagctagttttttatgatgttggcttgtttatcattttatgtttgaaattgaggatagtgggattgttgttgtcttagaata |
18564373 |
T |
|
| Q |
508 |
tgttaaagcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgtca |
569 |
Q |
| |
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| T |
18564374 |
tgttaaagcacccaagcccacgtctgtctcaagccttcattttctttaaatatcatttgtca |
18564435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 21142267 - 21142432
Alignment:
| Q |
20 |
taaagtgggaagtaaattcgtcacactattctctccaagagttgatagactcctcttcttgcccttt-aaccaagtcatggaggcaccttttagtgtcaa |
118 |
Q |
| |
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||||||| |||||||||||||| ||| | ||||| || ||||||||||| | || || |||| || |||||||| |||| |||||||||||| ||||| |
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| T |
21142267 |
taaagtgagaagtaaattcgtcgcacgactctctacaggagttgatagagttatcctccagccccttgaaccaagttatggcggcaccttttagcgtcaa |
21142366 |
T |
|
| Q |
119 |
cacaaacaacttgcacttcactgcgcctcgcacctggtggtaattgaggacggtatctaggtgttc |
184 |
Q |
| |
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| T |
21142367 |
aacaaacaattggaatttcaccacacctcgcacctggtggtaatcgaggacggtatctatgtgttc |
21142432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 7311512 - 7311464
Alignment:
| Q |
422 |
cctctagctagttttttatgatgttggcttgtttatcatgttatgtttt |
470 |
Q |
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| T |
7311512 |
cctctagctagtttttgatgatgttagcttgtttatcattttatgtttt |
7311464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 500 - 569
Target Start/End: Complemental strand, 7311445 - 7311376
Alignment:
| Q |
500 |
ttagaatatgttaaagcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgtca |
569 |
Q |
| |
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|||||||||||| ||||||| |||| ||||||| ||| | |||||||||| |||| ||||||||||||| |
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| T |
7311445 |
ttagaatatgttttagcaccctagcctacgtgtgcctctaaccttccttttgtttgcatatcatttgtca |
7311376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 17145621 - 17145456
Alignment:
| Q |
20 |
taaagtgggaagtaaattcgtcacactattctctccaagagttgatagactcctcttcttg-ccctttaaccaagtcatggaggcaccttttagtgtcaa |
118 |
Q |
| |
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||||||||| ||| ||||||| ||| |||| |||| ||||||||||| | ||||| | ||||| ||||||||||||| ||| ||||| |||||||| |
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| T |
17145621 |
taaagtgggtagtgaattcgttgcacagttctttccatgagttgatagagttatcttccagacccttgaaccaagtcatggtggcgcctttcagtgtcaa |
17145522 |
T |
|
| Q |
119 |
cacaaacaacttgcacttcactgcgcctcgcacctggtggtaattgaggacggtatctaggtgttc |
184 |
Q |
| |
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| || | ||||||||||| ||||||| | | |||||||||| |||||| |||| |||||||| |
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| T |
17145521 |
ggcgaatagtttgcacttcaccgcgcctcacgcttggtggtaatcaaggacgatatccaggtgttc |
17145456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 567
Target Start/End: Complemental strand, 834956 - 834890
Alignment:
| Q |
501 |
tagaatatgttaaagcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgt |
567 |
Q |
| |
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| T |
834956 |
tagaatatgttaaagcaccctaacttatgtgtgtcttaagccttccttttcttcacatatcatttgt |
834890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 567
Target Start/End: Complemental strand, 1200136 - 1200070
Alignment:
| Q |
501 |
tagaatatgttaaagcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgt |
567 |
Q |
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| T |
1200136 |
tagaatatgttaaagcaccctaacttatgtgtgtcttaagccttccttttcttcacatatcatttgt |
1200070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 854997 - 854929
Alignment:
| Q |
501 |
tagaatatgttaaagcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgtca |
569 |
Q |
| |
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|||||||||||| ||||||| | | | |||||||| |||||||||||||||| ||||||||||||| |
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| T |
854997 |
tagaatatgttatagcaccctaacttatgtgtgtcttaagccttccttttcttcacatatcatttgtca |
854929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 1213001 - 1212933
Alignment:
| Q |
501 |
tagaatatgttaaagcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgtca |
569 |
Q |
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|||||||||||| ||||||| | | | |||||||| |||||||||||||||| ||||||||||||| |
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| T |
1213001 |
tagaatatgttatagcaccctaacttatgtgtgtcttaagccttccttttcttcacatatcatttgtca |
1212933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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